Variant report

Variant	rs2295243
Chromosome Location	chr6:37300284-37300285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37299695..37302500-chr6:37310796..37313153,2	K562	blood:
2	chr6:37295574..37298465-chr6:37299510..37301716,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1224310	1.00[CEU][hapmap]
rs169007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195396	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195397	1.00[ASN][1000 genomes]
rs195398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs195400	1.00[ASN][1000 genomes]
rs3734327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734328	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734329	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6920456	1.00[ASN][1000 genomes]
rs6923752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs735924	1.00[CEU][hapmap]
rs7758096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7761597	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768797	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462289	1.00[CEU][hapmap]
rs9462290	1.00[CEU][hapmap]
rs9462293	1.00[CEU][hapmap]
rs9462294	1.00[CEU][hapmap]
rs9462299	1.00[ASN][1000 genomes]
rs9462300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9470534	1.00[CEU][hapmap]
rs9470543	1.00[CEU][hapmap]
rs9470554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs9470557	1.00[ASN][1000 genomes]
rs9689746	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37287200-37301000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:37288200-37301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37289400-37300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:37291600-37303000	Weak transcription	Fetal Brain Male	brain
8	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
9	chr6:37292400-37302200	Weak transcription	A549	lung
10	chr6:37292400-37303600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:37292600-37303600	Weak transcription	HMEC	breast
12	chr6:37292600-37308400	Weak transcription	HSMM	muscle
13	chr6:37292800-37302400	Weak transcription	Fetal Heart	heart
14	chr6:37292800-37303400	Weak transcription	NHDF-Ad	bronchial
15	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
16	chr6:37293200-37302600	Weak transcription	Stomach Mucosa	stomach
17	chr6:37295400-37301400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:37296400-37301200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:37296600-37301600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:37296600-37302200	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:37296800-37301200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:37296800-37301200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:37296800-37301400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37297000-37300400	Strong transcription	Liver	Liver
25	chr6:37297000-37301000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:37297000-37301000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:37297000-37301000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:37297000-37301200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:37297000-37301200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:37297000-37301200	Strong transcription	Dnd41	blood
31	chr6:37297000-37301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:37297000-37301400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:37297000-37301800	Strong transcription	Primary T cells from cord blood	blood
34	chr6:37297000-37302200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:37297000-37302200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:37297000-37302600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:37297200-37301000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr6:37297200-37301200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:37297200-37301200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:37297200-37301200	Strong transcription	GM12878-XiMat	blood
41	chr6:37297200-37301200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:37297200-37301400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:37297200-37301400	Strong transcription	K562	blood
44	chr6:37297200-37301600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:37297200-37301600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:37297200-37302400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:37297200-37302400	Strong transcription	Fetal Thymus	thymus
48	chr6:37297400-37301000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:37297400-37301200	Strong transcription	Adipose Nuclei	Adipose
50	chr6:37297600-37300600	Strong transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links