Variant report

Variant	rs7768797
Chromosome Location	chr6:37307230-37307231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37305344..37307361-chr6:37323441..37325135,2	K562	blood:
2	chr6:37302579..37305468-chr6:37307016..37308948,2	K562	blood:
3	chr6:37304825..37307374-chr6:37320661..37323463,2	K562	blood:

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs169007	1.00[ASN][1000 genomes]
rs195388	1.00[ASN][1000 genomes]
rs195389	1.00[ASN][1000 genomes]
rs195390	1.00[ASN][1000 genomes]
rs195391	1.00[ASN][1000 genomes]
rs195396	1.00[ASN][1000 genomes]
rs195397	1.00[ASN][1000 genomes]
rs195398	1.00[ASN][1000 genomes]
rs195400	1.00[ASN][1000 genomes]
rs2295243	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734327	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734328	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734329	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920004	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6920456	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6923752	0.92[EUR][1000 genomes]
rs7758096	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7761597	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768408	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462299	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462300	1.00[ASN][1000 genomes]
rs9470554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470557	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9689746	0.92[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
2	chr6:37292600-37308400	Weak transcription	HSMM	muscle
3	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
4	chr6:37299800-37308200	Weak transcription	NHLF	lung
5	chr6:37300000-37308000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:37300600-37307800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:37300600-37307800	Weak transcription	Fetal Lung	lung
9	chr6:37300600-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37300600-37308400	Weak transcription	Aorta	Aorta
11	chr6:37300600-37309800	Weak transcription	Spleen	Spleen
12	chr6:37301200-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:37301200-37308200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:37301200-37308200	Weak transcription	Osteobl	bone
15	chr6:37301400-37308200	Weak transcription	NH-A	brain
16	chr6:37302200-37307800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:37302200-37308000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:37302200-37309400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:37302200-37310800	Weak transcription	Thymus	Thymus
20	chr6:37302400-37307800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:37302400-37308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:37302400-37311200	Weak transcription	Fetal Thymus	thymus
23	chr6:37302600-37308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:37306800-37308400	Enhancers	Liver	Liver
25	chr6:37307200-37307600	Flanking Active TSS	HepG2	liver

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