Variant report

Variant	rs195764
Chromosome Location	chr6:37257787-37257788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37237077..37238889-chr6:37257524..37259817,2	K562	blood:
2	chr6:37250673..37254138-chr6:37255765..37259618,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11756258	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11758286	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12190959	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12210793	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12210895	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs149709	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149713	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs195410	0.82[CHB][hapmap]
rs195760	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2010960	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2622893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714051	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349035	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs195764	TREML2	cis	parietal	SCAN
rs195764	TREM1	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
4	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
8	chr6:37247000-37258000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine
11	chr6:37247000-37264400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:37247000-37265800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:37247200-37263800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:37247600-37266000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:37248000-37263400	Strong transcription	Placenta	Placenta
16	chr6:37248200-37258200	Strong transcription	HSMM	muscle
17	chr6:37248200-37263400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:37249400-37257800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr6:37250000-37261800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:37250200-37267400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:37250200-37269800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:37250400-37262400	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr6:37250600-37264400	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
25	chr6:37251400-37263800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:37252000-37264600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr6:37252000-37265200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:37252600-37265600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:37252800-37259000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:37252800-37263400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:37252800-37277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:37253000-37258800	Weak transcription	Brain Angular Gyrus	brain
33	chr6:37253000-37258800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:37253000-37259000	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:37253000-37259000	Weak transcription	Ovary	ovary
36	chr6:37253000-37259000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:37253000-37259000	Weak transcription	Right Ventricle	heart
38	chr6:37253000-37264000	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:37253000-37267000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:37253000-37269400	Weak transcription	Fetal Heart	heart
41	chr6:37253000-37275600	Weak transcription	A549	lung
42	chr6:37253000-37277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
45	chr6:37253200-37259000	Weak transcription	NHEK	skin
46	chr6:37253400-37259000	Weak transcription	Psoas Muscle	Psoas
47	chr6:37253800-37262000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:37254000-37259000	Weak transcription	Lung	lung
49	chr6:37254000-37273600	Weak transcription	HMEC	breast
50	chr6:37254200-37264000	Strong transcription	Primary B cells from peripheral blood	blood

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