Variant report

Variant	rs12190959
Chromosome Location	chr6:37221673-37221674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1055461	0.81[MEX][hapmap]
rs11756258	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11758286	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12210793	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs149713	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17572320	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs195410	0.82[CHB][hapmap]
rs195760	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs195764	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2010960	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622893	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4714051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349035	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12190959	TREML2	cis	parietal	SCAN
rs12190959	TREM1	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37213400-37224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:37213400-37225600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:37214400-37224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:37214400-37224800	Weak transcription	Hela-S3	cervix
5	chr6:37214800-37225200	Weak transcription	Ovary	ovary
6	chr6:37215000-37224600	Weak transcription	Osteobl	bone
7	chr6:37219200-37223800	Weak transcription	K562	blood
8	chr6:37219400-37224600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:37219600-37224600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:37219600-37224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:37219600-37224600	Weak transcription	HMEC	breast
12	chr6:37219800-37224800	Weak transcription	HUVEC	blood vessel
13	chr6:37220200-37224600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37221000-37222200	Enhancers	Fetal Intestine Small	intestine
15	chr6:37221200-37222200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:37221200-37222400	Enhancers	Fetal Intestine Large	intestine
17	chr6:37221600-37222000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:37221600-37222000	Enhancers	Dnd41	blood
19	chr6:37221600-37224800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links