Variant report

Variant	rs2010960
Chromosome Location	chr6:37229191-37229192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:37229013-37229310	H1-hESC	embryonic stem cell:	n/a	chr6:37229158-37229169
2	CEBPB	chr6:37229001-37229308	IMR90	lung:	n/a	chr6:37229158-37229169
3	CEBPB	chr6:37229007-37229339	K562	blood:	n/a	chr6:37229158-37229169
4	CEBPB	chr6:37228981-37229310	HepG2	liver:	n/a	chr6:37229158-37229169
5	CEBPB	chr6:37229093-37229251	Hela-S3	cervix:	n/a	chr6:37229158-37229169
6	CEBPB	chr6:37229051-37229240	HepG2	liver:	n/a	chr6:37229158-37229169
7	CEBPB	chr6:37229004-37229345	HepG2	liver:	n/a	chr6:37229158-37229169
8	CEBPB	chr6:37229032-37229337	HepG2	liver:	n/a	chr6:37229158-37229169
9	CEBPB	chr6:37229006-37229298	A549	lung:	n/a	chr6:37229158-37229169
10	CEBPB	chr6:37228982-37229348	K562	blood:	n/a	chr6:37229158-37229169

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37228464..37231833-chr6:37231945..37233770,3	K562	blood:
2	chr6:37228429..37230381-chr6:37249969..37252001,2	MCF-7	breast:

Variant related genes	Relation type
TMEM217	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11756258	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11758286	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12190959	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210793	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210895	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149709	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs149713	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17572320	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs195760	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs195764	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2622893	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4714051	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349035	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37229400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:37226400-37230200	Weak transcription	Left Ventricle	heart
3	chr6:37226400-37231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:37226400-37244000	Weak transcription	Gastric	stomach
5	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37226600-37232000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:37226600-37232200	Weak transcription	Ovary	ovary
9	chr6:37226600-37232600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:37226600-37234400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:37226600-37237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:37226600-37237400	Weak transcription	Placenta	Placenta
13	chr6:37226600-37237400	Weak transcription	HSMM	muscle
14	chr6:37226600-37240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:37226600-37240200	Weak transcription	Aorta	Aorta
16	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
17	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
19	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:37226800-37230200	Weak transcription	Right Ventricle	heart
22	chr6:37226800-37230400	Weak transcription	Thymus	Thymus
23	chr6:37226800-37237400	Weak transcription	NHDF-Ad	bronchial
24	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
25	chr6:37227000-37230400	Weak transcription	Fetal Brain Female	brain
26	chr6:37227000-37230400	Weak transcription	Small Intestine	intestine
27	chr6:37227000-37236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:37227000-37237000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
30	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:37227200-37229200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr6:37227200-37229600	Enhancers	HepG2	liver
33	chr6:37227200-37232400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:37227200-37237200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:37227200-37237400	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:37227200-37238400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:37227200-37241400	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:37227200-37247200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:37227200-37247200	Weak transcription	Brain Substantia Nigra	brain
40	chr6:37227200-37247200	Weak transcription	NHLF	lung
41	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
42	chr6:37227400-37229400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:37227400-37230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:37227400-37230000	Weak transcription	Stomach Mucosa	stomach
45	chr6:37227400-37230200	Weak transcription	Fetal Heart	heart
46	chr6:37227400-37231600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:37227400-37232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:37227400-37232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:37227400-37232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:37227400-37234200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links