Variant report

Variant	rs149713
Chromosome Location	chr6:37275414-37275415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37271332..37273724-chr6:37274272..37276053,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11756258	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11758286	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12190959	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12210793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12210895	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs149709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572320	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs195760	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs195764	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010960	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2622893	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714051	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349035	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
3	chr6:37252800-37277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37253000-37275600	Weak transcription	A549	lung
5	chr6:37253000-37277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
8	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
9	chr6:37259800-37275600	Weak transcription	Fetal Brain Male	brain
10	chr6:37260000-37276000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:37260800-37275600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:37261800-37280800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:37262400-37275600	Weak transcription	Brain Anterior Caudate	brain
15	chr6:37262400-37277000	Weak transcription	Psoas Muscle	Psoas
16	chr6:37263200-37280600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:37264800-37277600	Strong transcription	Primary T cells from cord blood	blood
18	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:37268400-37277400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:37268400-37277600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:37269200-37275800	Strong transcription	HepG2	liver
22	chr6:37269200-37276200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:37269200-37276200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:37269600-37277600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:37270400-37275800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:37270800-37275600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:37270800-37280200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:37271000-37275800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:37271000-37276200	Strong transcription	Dnd41	blood
30	chr6:37271000-37279200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:37271000-37280600	Weak transcription	Ovary	ovary
32	chr6:37271000-37280600	Weak transcription	NHLF	lung
33	chr6:37271000-37281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:37271200-37275800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:37271200-37277600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr6:37271200-37279200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:37271200-37281400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:37271200-37281600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:37271400-37276000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:37271400-37279000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:37271400-37279600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:37271600-37275800	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:37271600-37277400	Strong transcription	Adipose Nuclei	Adipose
45	chr6:37271800-37279200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:37271800-37280600	Weak transcription	Aorta	Aorta
47	chr6:37271800-37280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
49	chr6:37272000-37275800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:37272000-37277600	Strong transcription	Primary B cells from cord blood	blood

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