Variant report

Variant	rs9349035
Chromosome Location	chr6:37260996-37260997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37255134..37256804-chr6:37259145..37261866,3	K562	blood:
2	chr6:37252085..37257421-chr6:37258046..37261866,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11756258	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11758286	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12190959	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12210793	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12210895	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs149709	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149713	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572320	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195760	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs195764	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010960	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2622893	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714051	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine
7	chr6:37247000-37264400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr6:37247000-37265800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:37247200-37263800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:37247600-37266000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:37248000-37263400	Strong transcription	Placenta	Placenta
12	chr6:37248200-37263400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:37250000-37261800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:37250200-37267400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:37250200-37269800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:37250400-37262400	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr6:37250600-37264400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
19	chr6:37251400-37263800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37252000-37264600	Strong transcription	Fetal Muscle Trunk	muscle
21	chr6:37252000-37265200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:37252600-37265600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:37252800-37263400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:37252800-37277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:37253000-37264000	Strong transcription	Fetal Muscle Leg	muscle
26	chr6:37253000-37267000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:37253000-37269400	Weak transcription	Fetal Heart	heart
28	chr6:37253000-37275600	Weak transcription	A549	lung
29	chr6:37253000-37277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
32	chr6:37253800-37262000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:37254000-37273600	Weak transcription	HMEC	breast
34	chr6:37254200-37264000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:37254600-37261400	Strong transcription	Liver	Liver
36	chr6:37254600-37262600	Strong transcription	Adipose Nuclei	Adipose
37	chr6:37254800-37262400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr6:37254800-37271400	Strong transcription	Primary B cells from cord blood	blood
39	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
40	chr6:37255800-37272000	Weak transcription	Fetal Kidney	kidney
41	chr6:37256400-37263600	Weak transcription	Fetal Lung	lung
42	chr6:37256400-37264600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:37256800-37264000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:37256800-37264000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:37256800-37264400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:37257000-37262000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:37257000-37265600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:37257200-37262400	Strong transcription	Brain Anterior Caudate	brain
49	chr6:37257200-37267200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:37257200-37267400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links