Variant report

Variant	rs149709
Chromosome Location	chr6:37278933-37278934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37278426..37281348-chr6:37283112..37285978,2	MCF-7	breast:
2	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1055461	0.81[MEX][hapmap]
rs11756258	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11758286	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12190959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12210793	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12210895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs149713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs195410	0.82[CHB][hapmap]
rs195760	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs195764	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010960	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2622893	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714051	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9349035	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Acne (severe)	24927181	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs149709	TREM1	cis	parietal	SCAN
rs149709	TREML2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
3	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
5	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
6	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:37261800-37280800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:37263200-37280600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:37270800-37280200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:37271000-37279200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:37271000-37280600	Weak transcription	Ovary	ovary
13	chr6:37271000-37280600	Weak transcription	NHLF	lung
14	chr6:37271000-37281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:37271200-37279200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:37271200-37281400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:37271200-37281600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:37271400-37279000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:37271400-37279600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:37271800-37279200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:37271800-37280600	Weak transcription	Aorta	Aorta
23	chr6:37271800-37280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
25	chr6:37272200-37279400	Weak transcription	HUVEC	blood vessel
26	chr6:37272200-37280200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:37272200-37281600	Weak transcription	HSMM	muscle
28	chr6:37272400-37280800	Weak transcription	Fetal Kidney	kidney
29	chr6:37272800-37279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:37273000-37280200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:37273200-37280200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:37273400-37280600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:37273400-37285400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:37274000-37280800	Weak transcription	Pancreas	Pancrea
35	chr6:37274200-37280200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:37274200-37280200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:37274200-37280400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:37274200-37280600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:37274200-37280600	Weak transcription	Gastric	stomach
40	chr6:37274200-37280800	Weak transcription	Colonic Mucosa	Colon
41	chr6:37274200-37281400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:37274400-37279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:37274400-37279200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:37274400-37280400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:37274400-37280600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:37274400-37280600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:37274400-37281400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:37274600-37280200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:37274600-37280200	Weak transcription	HSMMtube	muscle
50	chr6:37274600-37287000	Weak transcription	HMEC	breast

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