Variant report

Variant	rs7746815
Chromosome Location	chr6:1728931-1728932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1724262..1726680-chr6:1728353..1730358,2	K562	blood:
2	chr6:1708677..1711111-chr6:1726818..1728968,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf195-35	chr6:1727169-1729106	NONHSAT106544

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3734739	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs3800030	0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3800034	0.87[MEX][hapmap]
rs3823261	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs6596855	0.82[GIH][hapmap]
rs6906968	0.92[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6930768	0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7763069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9378310	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9392326	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs960295	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024111	chr6:1231850-1730146	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1021924	chr6:1254891-1736995	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv538082	chr6:1254891-1736995	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv530888	chr6:1605768-1739933	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1695400-1729400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:1695800-1731400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:1701200-1749400	Weak transcription	Colonic Mucosa	Colon
4	chr6:1716000-1749200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:1717600-1731600	Weak transcription	Aorta	Aorta
6	chr6:1718800-1731400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:1721200-1731600	Weak transcription	Right Atrium	heart
8	chr6:1721200-1746200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:1721200-1748800	Weak transcription	Osteobl	bone
10	chr6:1721400-1730600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:1721400-1739400	Weak transcription	Hela-S3	cervix
12	chr6:1722000-1729400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:1723000-1743200	Strong transcription	HepG2	liver
14	chr6:1724800-1729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:1725000-1729200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:1725000-1729200	Weak transcription	Adipose Nuclei	Adipose
17	chr6:1725000-1729400	Weak transcription	Spleen	Spleen
18	chr6:1725000-1730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:1725000-1737800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:1725200-1729000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:1725200-1729200	Weak transcription	Esophagus	oesophagus
22	chr6:1725200-1729400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:1725200-1729600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:1725200-1730800	Weak transcription	GM12878-XiMat	blood
25	chr6:1725200-1733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:1725400-1729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:1725400-1729200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:1725400-1729200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:1725400-1729400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:1725400-1729600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:1725400-1735600	Weak transcription	Stomach Mucosa	stomach
32	chr6:1725600-1729200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:1725600-1729200	Weak transcription	HUVEC	blood vessel
34	chr6:1725600-1729200	Weak transcription	NHEK	skin
35	chr6:1725600-1729600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:1726400-1729200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:1726400-1730600	Weak transcription	Primary B cells from cord blood	blood
38	chr6:1726800-1729000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:1726800-1729200	Weak transcription	Dnd41	blood
40	chr6:1726800-1730400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:1726800-1730600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:1726800-1730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:1726800-1731600	Weak transcription	Fetal Intestine Small	intestine
44	chr6:1726800-1735400	Weak transcription	Gastric	stomach
45	chr6:1726800-1735600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:1726800-1749000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:1726800-1749000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:1727000-1735600	Weak transcription	Pancreas	Pancrea
49	chr6:1727000-1737600	Weak transcription	Primary T cells from cord blood	blood
50	chr6:1728400-1730800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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