Variant report

Variant	rs7750196
Chromosome Location	chr6:159864864-159864865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484952	0.86[ASN][1000 genomes]
rs10806712	0.84[ASN][1000 genomes]
rs10806714	0.82[ASN][1000 genomes]
rs12190111	0.92[ASN][1000 genomes]
rs12193335	0.87[ASN][1000 genomes]
rs1339334	0.91[ASN][1000 genomes]
rs1339335	0.92[ASN][1000 genomes]
rs1416608	0.83[ASN][1000 genomes]
rs1466174	0.86[ASN][1000 genomes]
rs1466175	0.86[ASN][1000 genomes]
rs1551214	0.86[ASN][1000 genomes]
rs1551215	0.86[ASN][1000 genomes]
rs1551216	0.86[ASN][1000 genomes]
rs1890582	0.91[ASN][1000 genomes]
rs1970377	0.94[ASN][1000 genomes]
rs1977750	0.90[ASN][1000 genomes]
rs2123168	0.86[ASN][1000 genomes]
rs2167607	0.86[ASN][1000 genomes]
rs2167608	0.86[ASN][1000 genomes]
rs2880105	0.86[ASN][1000 genomes]
rs2880106	0.86[ASN][1000 genomes]
rs4521619	0.96[ASN][1000 genomes]
rs4590297	0.82[ASN][1000 genomes]
rs4613845	0.84[ASN][1000 genomes]
rs4709324	0.90[ASN][1000 genomes]
rs6455640	0.92[ASN][1000 genomes]
rs6899318	0.87[ASN][1000 genomes]
rs6922833	0.90[ASN][1000 genomes]
rs6923208	0.91[ASN][1000 genomes]
rs6931870	0.90[ASN][1000 genomes]
rs6935441	0.91[ASN][1000 genomes]
rs9355274	0.90[ASN][1000 genomes]
rs9355730	0.91[ASN][1000 genomes]
rs9355731	0.84[ASN][1000 genomes]
rs9364520	0.80[ASN][1000 genomes]
rs9364521	0.86[ASN][1000 genomes]
rs9365060	0.91[ASN][1000 genomes]
rs9365062	0.86[ASN][1000 genomes]
rs9457641	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030483	chr6:159475679-159910480	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv538490	chr6:159475679-159910480	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159859000-159867800	Enhancers	Fetal Muscle Leg	muscle
2	chr6:159860600-159866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:159862400-159865000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:159862600-159866800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:159864400-159865200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:159864400-159865600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:159864600-159865400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:159864600-159866200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:159864800-159865200	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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