Variant report

Variant	rs9355730
Chromosome Location	chr6:159872676-159872677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:159865666..159867894-chr6:159870973..159873736,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484952	0.95[ASN][1000 genomes]
rs10806712	0.93[ASN][1000 genomes]
rs10806714	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190111	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12193335	0.96[ASN][1000 genomes]
rs1339334	0.99[ASN][1000 genomes]
rs1339335	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1416608	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1466174	0.95[ASN][1000 genomes]
rs1466175	0.95[ASN][1000 genomes]
rs1551214	0.94[ASN][1000 genomes]
rs1551215	0.95[ASN][1000 genomes]
rs1551216	0.94[ASN][1000 genomes]
rs1890582	0.89[ASN][1000 genomes]
rs1970377	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1977750	0.99[ASN][1000 genomes]
rs2123168	0.95[ASN][1000 genomes]
rs2167607	0.94[ASN][1000 genomes]
rs2167608	0.94[ASN][1000 genomes]
rs2880105	0.95[ASN][1000 genomes]
rs2880106	0.95[ASN][1000 genomes]
rs4521619	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4590297	0.90[ASN][1000 genomes]
rs4613845	0.93[ASN][1000 genomes]
rs4709324	0.88[ASN][1000 genomes]
rs55942322	0.80[AMR][1000 genomes]
rs6455640	0.98[ASN][1000 genomes]
rs6455644	0.82[ASN][1000 genomes]
rs6899318	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922833	0.97[ASN][1000 genomes]
rs6923208	0.99[ASN][1000 genomes]
rs6931870	0.99[ASN][1000 genomes]
rs6935441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750196	0.91[ASN][1000 genomes]
rs9355274	0.97[ASN][1000 genomes]
rs9355731	0.90[ASN][1000 genomes]
rs9364520	0.89[ASN][1000 genomes]
rs9364521	0.95[ASN][1000 genomes]
rs9365060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365062	0.95[ASN][1000 genomes]
rs9457641	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030483	chr6:159475679-159910480	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv538490	chr6:159475679-159910480	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9355730	DYNLT1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159867000-159876600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:159871200-159873600	Enhancers	Fetal Stomach	stomach
3	chr6:159871600-159873000	Enhancers	Fetal Lung	lung
4	chr6:159871800-159872800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:159872000-159872800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:159872200-159877000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:159872200-159881000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:159872400-159872800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:159872400-159875600	Weak transcription	Aorta	Aorta
10	chr6:159872400-159876400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:159872600-159872800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr6:159872600-159877200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:159872600-159882000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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