Variant report

Variant	rs7751168
Chromosome Location	chr6:144506568-144506569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17073463	0.85[JPT][hapmap]
rs17073482	0.85[JPT][hapmap]
rs17073498	1.00[ASN][1000 genomes]
rs17073506	0.85[JPT][hapmap]
rs59612420	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
4	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
6	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
7	chr6:144487000-144507800	Weak transcription	Esophagus	oesophagus
8	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:144489400-144508200	Weak transcription	Liver	Liver
10	chr6:144493600-144507600	Weak transcription	Placenta	Placenta
11	chr6:144497400-144508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:144499600-144511000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:144499800-144507800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:144500800-144508000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:144501000-144507600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:144501000-144507800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:144501000-144507800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:144501000-144507800	Weak transcription	Lung	lung
20	chr6:144501200-144507800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:144501200-144507800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:144501200-144508400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:144501400-144507800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:144501400-144512400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:144501600-144507800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:144501600-144508200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:144502000-144507600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:144502000-144507800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:144502000-144507800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:144502600-144509600	Weak transcription	Primary B cells from cord blood	blood
33	chr6:144503600-144507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:144503600-144507800	Weak transcription	Gastric	stomach
35	chr6:144504000-144507600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:144504000-144507800	Weak transcription	Spleen	Spleen
37	chr6:144504000-144511800	Weak transcription	Right Atrium	heart
38	chr6:144504200-144507000	Genic enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:144504600-144507600	Weak transcription	GM12878-XiMat	blood
40	chr6:144504800-144507800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:144505000-144507800	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:144505400-144507600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:144505400-144512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:144505600-144511400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:144506200-144508000	Weak transcription	Aorta	Aorta
46	chr6:144506200-144508000	Weak transcription	NHLF	lung
47	chr6:144506200-144515600	Weak transcription	Fetal Heart	heart
48	chr6:144506400-144506600	Enhancers	Colon Smooth Muscle	Colon
49	chr6:144506400-144507200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr6:144506400-144507800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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