Variant report

Variant	rs77512616
Chromosome Location	chr6:131018815-131018816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:130643524..130644551-chr6:131018759..131019797,15	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP3-324N14.2.1-2	chr6:131018662-131018923	XLOC_005462
2	lnc-RP3-324N14.2.1-2	chr6:131018663-131018923	ENSG00000229923.2

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522019	chr6:131017953-131019627	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131015800-131019000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:131017600-131019000	Enhancers	HUVEC	blood vessel
3	chr6:131017600-131019200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:131017600-131019200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:131017600-131019600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:131017600-131019600	Enhancers	Osteobl	bone
7	chr6:131017800-131019200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:131017800-131019400	Enhancers	NHEK	skin
9	chr6:131017800-131019600	Enhancers	Primary T cells from cord blood	blood
10	chr6:131017800-131019600	Enhancers	NHDF-Ad	bronchial
11	chr6:131018000-131019000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:131018000-131019200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:131018000-131019600	Enhancers	Dnd41	blood
14	chr6:131018000-131020800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:131018200-131019000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:131018200-131019200	Enhancers	HMEC	breast
17	chr6:131018200-131019200	Enhancers	NHLF	lung
18	chr6:131018200-131019400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:131018200-131019600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:131018200-131019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:131018200-131019600	Enhancers	NH-A	brain
22	chr6:131018400-131019200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:131018400-131019200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:131018400-131019200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:131018400-131019600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:131018400-131029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:131018600-131019200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:131018600-131019200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:131018800-131019200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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