Variant report

Variant	rs7752617
Chromosome Location	chr6:37751219-37751220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37744756..37747522-chr6:37749501..37752437,3	K562	blood:
2	chr1:156185734..156186254-chr6:37751204..37751724,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12193708	0.93[ASN][1000 genomes]
rs12207050	0.93[ASN][1000 genomes]
rs13198558	0.82[CHB][hapmap]
rs34054193	0.92[ASN][1000 genomes]
rs6928307	0.84[JPT][hapmap]
rs6929224	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7752617	RPL10A	cis	parietal	SCAN
rs7752617	KCNK17	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37750600-37751600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr6:37750600-37751800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:37750800-37751400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:37750800-37751400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
5	chr6:37750800-37751400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr6:37750800-37751400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37750800-37751400	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr6:37750800-37751400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
9	chr6:37750800-37751400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
10	chr6:37750800-37751400	Bivalent Enhancer	Fetal Thymus	thymus
11	chr6:37750800-37751400	Bivalent Enhancer	Thymus	Thymus
12	chr6:37750800-37751600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:37750800-37751600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:37750800-37751600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:37750800-37751600	Enhancers	Liver	Liver
16	chr6:37750800-37751600	Bivalent Enhancer	Placenta	Placenta
17	chr6:37750800-37751800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37750800-37752000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:37750800-37752000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:37750800-37752000	Active TSS	Right Atrium	heart
21	chr6:37750800-37752200	Active TSS	Brain Angular Gyrus	brain
22	chr6:37750800-37752400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:37750800-37752400	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:37750800-37752600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:37750800-37752600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:37750800-37752600	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr6:37750800-37752600	Flanking Active TSS	Osteobl	bone
28	chr6:37750800-37752800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:37750800-37752800	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr6:37750800-37753400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:37751000-37751400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr6:37751000-37751400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:37751000-37751400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:37751000-37751400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
35	chr6:37751000-37751400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr6:37751000-37751400	Flanking Active TSS	Fetal Lung	lung
37	chr6:37751000-37751400	Enhancers	Gastric	stomach
38	chr6:37751000-37751400	Flanking Active TSS	Left Ventricle	heart
39	chr6:37751000-37751400	Flanking Active TSS	Right Ventricle	heart
40	chr6:37751000-37751400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
41	chr6:37751000-37751600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:37751000-37751600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr6:37751000-37751600	Enhancers	Lung	lung
44	chr6:37751000-37751800	Active TSS	Duodenum Mucosa	Duodenum
45	chr6:37751000-37751800	Enhancers	Fetal Heart	heart
46	chr6:37751000-37751800	Weak transcription	HSMMtube	muscle
47	chr6:37751000-37752200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr6:37751000-37752200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr6:37751000-37752200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
50	chr6:37751000-37752200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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