Variant report

Variant	rs7753712
Chromosome Location	chr6:33583113-33583114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33577318..33579921-chr6:33582665..33584246,2	K562	blood:
2	chr6:33581288..33583329-chr6:33600315..33602072,2	K562	blood:
3	chr6:33582787..33585683-chr6:33587089..33588741,2	K562	blood:

Variant related genes	Relation type
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10947416	0.94[AFR][1000 genomes]
rs1536043	0.94[AFR][1000 genomes]
rs16869280	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1794681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1794682	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894349	0.89[ASN][1000 genomes]
rs4711332	0.82[AFR][1000 genomes]
rs4713641	0.94[AFR][1000 genomes]
rs4713642	0.94[AFR][1000 genomes]
rs4713643	0.82[AFR][1000 genomes]
rs475982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs494654	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs499384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750812	0.91[AFR][1000 genomes]
rs7753829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768401	0.91[AFR][1000 genomes]
rs7769019	0.91[AFR][1000 genomes]
rs7772766	0.82[AFR][1000 genomes]
rs7775537	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
6	esv3471778	chr6:33581874-33587572	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3502814	chr6:33581974-33586972	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1808252	chr6:33582090-33585127	Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1810285	chr6:33582090-33585127	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1838904	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1840099	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3502822	chr6:33582379-33587443	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv3502820	chr6:33582474-33586872	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3502823	chr6:33582807-33586474	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3471782	chr6:33582855-33586092	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2575696	chr6:33582877-33586760	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv511877	chr6:33582951-33585863	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3471783	chr6:33582999-33586847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv2083910	chr6:33583013-33586018	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv3471779	chr6:33583068-33585951	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3502816	chr6:33583087-33585942	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3502817	chr6:33583090-33585948	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv3502813	chr6:33583108-33585886	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33574400-33583200	Enhancers	HMEC	breast
2	chr6:33578000-33587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:33578800-33588000	Weak transcription	Gastric	stomach
4	chr6:33579000-33583800	Weak transcription	Right Ventricle	heart
5	chr6:33579200-33586600	Weak transcription	Fetal Lung	lung
6	chr6:33579200-33587000	Weak transcription	Pancreas	Pancrea
7	chr6:33579400-33587000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:33579400-33587000	Weak transcription	Right Atrium	heart
9	chr6:33579400-33588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:33580000-33586800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:33580000-33587600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:33580800-33583400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:33581600-33588000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:33581800-33586800	Weak transcription	A549	lung
15	chr6:33582000-33583200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:33582000-33584000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:33582000-33586000	Weak transcription	Spleen	Spleen
18	chr6:33582000-33586600	Weak transcription	Placenta	Placenta
19	chr6:33582000-33586800	Weak transcription	Colonic Mucosa	Colon
20	chr6:33582000-33587000	Weak transcription	Left Ventricle	heart
21	chr6:33582000-33587400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:33582000-33587400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:33582000-33587400	Weak transcription	NHLF	lung
24	chr6:33582200-33583200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:33582200-33584000	Weak transcription	Fetal Intestine Large	intestine
26	chr6:33582200-33586000	Weak transcription	HUVEC	blood vessel
27	chr6:33582200-33586000	Weak transcription	NHEK	skin
28	chr6:33582200-33586800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:33582200-33587200	Enhancers	Hela-S3	cervix
30	chr6:33582200-33587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:33582400-33586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:33582400-33586800	Weak transcription	Stomach Mucosa	stomach
33	chr6:33582400-33587000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:33582400-33587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:33582400-33587200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:33582400-33587200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:33582600-33586800	Weak transcription	Lung	lung
38	chr6:33583000-33584000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:33583000-33584800	Weak transcription	Osteobl	bone
40	chr6:33583000-33586000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:33583000-33586000	Weak transcription	HSMM	muscle
42	chr6:33583000-33586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:33583000-33586600	Weak transcription	NHDF-Ad	bronchial
44	chr6:33583000-33587000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:33583000-33587000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:33583000-33587000	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links