Variant report

Variant	rs77544968
Chromosome Location	chr6:1768546-1768547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:1767654..1768676-chr6:1832751..1833553,3	MCF-7	breast:
2	chr6:1641308..1641822-chr6:1768377..1768898,2	MCF-7	breast:
3	chr6:1762365..1765398-chr6:1767554..1769715,3	K562	blood:
4	chr6:1641157..1641856-chr6:1767705..1768705,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf195-34	chr6:1767197-1772399	NONHSAT106546
2	lnc-C6orf195-34	chr6:1767197-1772399	NONHSAT106547

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600809	chr6:1732741-1775436	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv869043	chr6:1744238-2006788	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538094	chr6:1757776-1907505	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv528129	chr6:1767459-1772720	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv518739	chr6:1767459-1773297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1749800-1779000	Weak transcription	Aorta	Aorta
2	chr6:1751200-1780400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:1757200-1770600	Weak transcription	Lung	lung
4	chr6:1758600-1771400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:1762600-1770600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:1762800-1801600	Weak transcription	Colonic Mucosa	Colon
7	chr6:1763000-1792600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:1763800-1771600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:1764000-1771400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:1764000-1773600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:1764200-1771400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:1764400-1770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:1765000-1770800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:1765400-1768800	Enhancers	Stomach Mucosa	stomach
15	chr6:1765400-1768800	Enhancers	HUVEC	blood vessel
16	chr6:1766000-1773600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:1766400-1768600	Enhancers	HMEC	breast
18	chr6:1766800-1768800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:1766800-1768800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:1767000-1768600	Enhancers	Fetal Kidney	kidney
21	chr6:1767000-1768800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:1767000-1770600	Weak transcription	Pancreas	Pancrea
23	chr6:1767000-1770600	Weak transcription	HepG2	liver
24	chr6:1767200-1771600	Weak transcription	Esophagus	oesophagus
25	chr6:1767600-1768600	Enhancers	A549	lung
26	chr6:1767600-1768600	Enhancers	NH-A	brain
27	chr6:1767800-1769000	Enhancers	GM12878-XiMat	blood
28	chr6:1767800-1770600	Weak transcription	Fetal Thymus	thymus
29	chr6:1767800-1770600	Weak transcription	NHLF	lung
30	chr6:1768000-1770400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:1768000-1770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:1768000-1778400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:1768000-1778600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:1768200-1768800	Enhancers	Primary T cells from cord blood	blood
35	chr6:1768200-1768800	Enhancers	Hela-S3	cervix
36	chr6:1768200-1769400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:1768200-1770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:1768200-1770600	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:1768200-1771400	Weak transcription	Gastric	stomach
40	chr6:1768200-1773000	Weak transcription	Fetal Lung	lung
41	chr6:1768200-1773200	Weak transcription	Fetal Intestine Large	intestine
42	chr6:1768200-1773600	Weak transcription	Fetal Intestine Small	intestine
43	chr6:1768200-1775200	Weak transcription	Psoas Muscle	Psoas
44	chr6:1768200-1777000	Weak transcription	Left Ventricle	heart
45	chr6:1768200-1778400	Weak transcription	Brain Anterior Caudate	brain
46	chr6:1768200-1803600	Weak transcription	Small Intestine	intestine
47	chr6:1768400-1770200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:1768400-1770200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:1768400-1770400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:1768400-1770400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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