Variant report

Variant	rs7754910
Chromosome Location	chr6:55731353-55731354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10485077	1.00[CHD][hapmap]
rs16887121	1.00[CHD][hapmap]
rs16887128	1.00[CHD][hapmap]
rs16887233	1.00[MEX][hapmap]
rs16887237	1.00[CHD][hapmap]
rs16887302	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs73450214	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760513	1.00[MEX][hapmap]
rs7766885	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55714000-55733200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:55728200-55733400	Enhancers	Fetal Heart	heart
3	chr6:55729000-55733400	Weak transcription	Placenta	Placenta
4	chr6:55730000-55732200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:55730200-55732000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:55730200-55732800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:55730200-55733600	Enhancers	Hela-S3	cervix
8	chr6:55730200-55735200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:55730200-55735200	Enhancers	NHEK	skin
10	chr6:55730400-55732200	Enhancers	HMEC	breast
11	chr6:55730600-55731400	Enhancers	A549	lung
12	chr6:55730800-55731400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:55731000-55732800	Genic enhancers	Fetal Lung	lung
14	chr6:55731200-55731400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:55731200-55731600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:55731200-55731600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:55731200-55734000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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