Variant report

Variant	rs16887233
Chromosome Location	chr6:55698009-55698010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16887166	1.00[AMR][1000 genomes]
rs16887210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911694	1.00[AMR][1000 genomes]
rs6917638	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925427	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925870	1.00[AMR][1000 genomes]
rs7740815	1.00[AMR][1000 genomes]
rs7741923	1.00[AMR][1000 genomes]
rs7742612	1.00[AMR][1000 genomes]
rs7754910	1.00[MEX][hapmap]
rs7760513	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7766885	1.00[MEX][hapmap]
rs7767094	1.00[AMR][1000 genomes]
rs7774192	1.00[AMR][1000 genomes]
rs9688725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55693200-55698200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:55693400-55700200	Weak transcription	Fetal Lung	lung
3	chr6:55693400-55701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:55695200-55699000	Enhancers	Fetal Heart	heart
5	chr6:55696600-55698600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:55696800-55698400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:55698000-55698400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:55698000-55698600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:55698000-55698600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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