Variant report

Variant	rs6911694
Chromosome Location	chr6:55672465-55672466
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16887166	1.00[AMR][1000 genomes]
rs16887210	1.00[AMR][1000 genomes]
rs16887215	1.00[AMR][1000 genomes]
rs16887218	1.00[AMR][1000 genomes]
rs16887233	1.00[AMR][1000 genomes]
rs6917638	1.00[AMR][1000 genomes]
rs6925427	1.00[AMR][1000 genomes]
rs6925870	1.00[AMR][1000 genomes]
rs7740815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741923	1.00[AMR][1000 genomes]
rs7742612	1.00[AMR][1000 genomes]
rs7760513	1.00[AMR][1000 genomes]
rs7767094	1.00[AMR][1000 genomes]
rs7774192	1.00[AMR][1000 genomes]
rs9688725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885909	chr6:55539010-55674338	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv885910	chr6:55628283-55684300	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv603164	chr6:55631762-55674338	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55656400-55676400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:55666000-55672800	Strong transcription	Fetal Lung	lung
3	chr6:55667400-55672800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:55667400-55673600	Weak transcription	Fetal Heart	heart
5	chr6:55670800-55688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:55672400-55673600	ZNF genes & repeats	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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