Variant report

Variant	rs16887210
Chromosome Location	chr6:55691119-55691120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16887166	1.00[AMR][1000 genomes]
rs16887215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911694	1.00[AMR][1000 genomes]
rs6917638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925870	1.00[AMR][1000 genomes]
rs7740815	1.00[AMR][1000 genomes]
rs7741923	1.00[AMR][1000 genomes]
rs7742612	1.00[AMR][1000 genomes]
rs7760513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767094	1.00[AMR][1000 genomes]
rs7774192	1.00[AMR][1000 genomes]
rs9688725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55684000-55692000	Weak transcription	Fetal Brain Male	brain
2	chr6:55687200-55692400	Weak transcription	HepG2	liver
3	chr6:55687800-55693200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:55687800-55693200	Enhancers	HMEC	breast
5	chr6:55687800-55693800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:55688200-55693400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:55688800-55692000	Enhancers	Fetal Intestine Small	intestine
8	chr6:55689200-55691200	Enhancers	A549	lung
9	chr6:55689200-55693200	Enhancers	NHEK	skin
10	chr6:55689200-55693400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:55690200-55691200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:55690200-55691400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:55690400-55691600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:55690400-55693000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:55690400-55693200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:55690600-55698000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:55690800-55691600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:55690800-55691800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:55691000-55691800	Enhancers	Fetal Heart	heart
20	chr6:55691000-55691800	Weak transcription	NHDF-Ad	bronchial
21	chr6:55691000-55692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:55691000-55692600	Weak transcription	Fetal Lung	lung
23	chr6:55691000-55692800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:55691000-55693000	Weak transcription	NHLF	lung
25	chr6:55691000-55693400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:55691000-55693600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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