Variant report

Variant	rs7740815
Chromosome Location	chr6:55658730-55658731
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16887166	1.00[AMR][1000 genomes]
rs16887210	1.00[AMR][1000 genomes]
rs16887215	1.00[AMR][1000 genomes]
rs16887218	1.00[AMR][1000 genomes]
rs16887233	1.00[AMR][1000 genomes]
rs6911694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917638	1.00[AMR][1000 genomes]
rs6925427	1.00[AMR][1000 genomes]
rs6925870	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7741923	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7742612	1.00[AMR][1000 genomes]
rs7760513	1.00[AMR][1000 genomes]
rs7767094	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7774192	1.00[AMR][1000 genomes]
rs9688725	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885909	chr6:55539010-55674338	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv885910	chr6:55628283-55684300	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv603164	chr6:55631762-55674338	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55618200-55672400	Weak transcription	Placenta	Placenta
2	chr6:55643200-55659000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:55656200-55667600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:55656400-55676400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:55656600-55668400	Weak transcription	Fetal Brain Male	brain
6	chr6:55657000-55666400	Weak transcription	Fetal Heart	heart
7	chr6:55657200-55659400	Strong transcription	Fetal Lung	lung
8	chr6:55658000-55659000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:55658200-55659800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:55658200-55660000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:55658400-55662200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:55658600-55659000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:55658600-55659800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:55658600-55666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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