Variant report

Variant	rs7755338
Chromosome Location	chr6:147376280-147376281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147367267..147370246-chr6:147374204..147376583,2	K562	blood:
2	chr6:147376041..147378550-chr6:147523846..147525857,2	K562	blood:
3	chr6:147371586..147374372-chr6:147376075..147380479,4	K562	blood:
4	chr6:147371586..147374760-chr6:147376075..147378911,4	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12209736	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1529016	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs1881660	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3734477	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4896903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570789	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6901138	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6910250	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920096	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924131	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930740	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7749744	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767185	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772651	0.91[CHB][hapmap]
rs9322088	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322089	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs9377043	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9377045	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386178	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9403845	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9485141	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9497685	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497690	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147373200-147377600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:147373400-147377400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr6:147373600-147377400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:147375000-147377000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:147375200-147376800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:147375400-147376600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:147375400-147380000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:147375600-147376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:147375600-147377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:147375600-147380000	Weak transcription	HepG2	liver
11	chr6:147375600-147384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:147375800-147377600	Enhancers	Fetal Brain Male	brain
13	chr6:147376000-147377600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:147376200-147377800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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