Variant report

Variant	rs7755889
Chromosome Location	chr6:163980863-163980864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163978491..163982172-chr6:163982815..163986185,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964059	1.00[EUR][1000 genomes]
rs56098044	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57325238	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59777232	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013596	0.97[EUR][1000 genomes]
rs73017335	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021403	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73021406	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021501	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739152	1.00[EUR][1000 genomes]
rs7752293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754132	1.00[EUR][1000 genomes]
rs7756950	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163926600-163991800	Weak transcription	Esophagus	oesophagus
2	chr6:163940200-163983000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:163949600-163992000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:163949600-163995400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:163951200-163993200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:163951600-163985800	Weak transcription	Hela-S3	cervix
7	chr6:163952400-163984400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:163952600-163981400	Weak transcription	Pancreas	Pancrea
9	chr6:163952600-163982800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:163952600-163996600	Weak transcription	Gastric	stomach
11	chr6:163954000-163984200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:163954000-163984400	Weak transcription	Aorta	Aorta
13	chr6:163954000-163991600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:163954800-163984200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:163955200-163984200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:163955800-163983000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:163955800-163984400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:163957800-163982800	Weak transcription	Placenta	Placenta
19	chr6:163957800-163983000	Weak transcription	Osteobl	bone
20	chr6:163958200-163984600	Weak transcription	HMEC	breast
21	chr6:163958200-163991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:163958400-163984400	Weak transcription	Fetal Thymus	thymus
23	chr6:163958800-163983000	Weak transcription	NH-A	brain
24	chr6:163959600-163984400	Weak transcription	Ovary	ovary
25	chr6:163959800-163997200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:163960400-163984400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:163960600-163993000	Weak transcription	A549	lung
28	chr6:163961600-163984800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:163965400-163984600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:163965600-163995000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:163966800-163983200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:163966800-163984400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:163966800-163987000	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:163967000-163982800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:163967200-163984200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:163968800-163991800	Weak transcription	Fetal Brain Male	brain
37	chr6:163969000-163991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:163970400-163991600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:163970800-164000200	Weak transcription	Right Atrium	heart
40	chr6:163971800-163981200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:163972200-163984400	Strong transcription	HSMM	muscle
42	chr6:163972400-163981600	Weak transcription	Primary T cells from cord blood	blood
43	chr6:163972600-163982800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:163972600-163995600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:163974000-163997000	Weak transcription	Fetal Intestine Small	intestine
46	chr6:163974200-163997000	Weak transcription	Fetal Intestine Large	intestine
47	chr6:163974400-163983000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:163975400-163983400	Weak transcription	Colonic Mucosa	Colon
49	chr6:163975400-163984400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:163975800-163982800	Weak transcription	Fetal Lung	lung

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