Variant report

Variant	rs11964059
Chromosome Location	chr6:163975823-163975824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163968532..163970841-chr6:163975024..163977489,2	MCF-7	breast:
2	chr6:163974907..163977416-chr6:163988942..163991907,2	K562	blood:
3	chr6:163968649..163973579-chr6:163974000..163977758,5	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56098044	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57325238	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59777232	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455905	0.82[MEX][hapmap]
rs6902608	0.82[MEX][hapmap]
rs73013596	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73017335	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021403	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73021406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021501	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739152	1.00[EUR][1000 genomes]
rs7752293	1.00[EUR][1000 genomes]
rs7754132	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7755889	1.00[EUR][1000 genomes]
rs7756950	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760526	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770852	0.82[MEX][hapmap]
rs9458859	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163926600-163991800	Weak transcription	Esophagus	oesophagus
2	chr6:163940200-163983000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:163949600-163992000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:163949600-163995400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:163951000-163978800	Weak transcription	Fetal Kidney	kidney
6	chr6:163951200-163993200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:163951600-163985800	Weak transcription	Hela-S3	cervix
8	chr6:163952400-163984400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:163952600-163979600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:163952600-163981400	Weak transcription	Pancreas	Pancrea
11	chr6:163952600-163982800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:163952600-163996600	Weak transcription	Gastric	stomach
13	chr6:163954000-163979400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:163954000-163984200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:163954000-163984400	Weak transcription	Aorta	Aorta
16	chr6:163954000-163991600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:163954800-163984200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:163955000-163979600	Weak transcription	NHEK	skin
19	chr6:163955200-163984200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:163955800-163983000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:163955800-163984400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:163956000-163978000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:163956000-163979400	Weak transcription	NHLF	lung
24	chr6:163956200-163979800	Weak transcription	NHDF-Ad	bronchial
25	chr6:163957800-163982800	Weak transcription	Placenta	Placenta
26	chr6:163957800-163983000	Weak transcription	Osteobl	bone
27	chr6:163958200-163984600	Weak transcription	HMEC	breast
28	chr6:163958200-163991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:163958400-163984400	Weak transcription	Fetal Thymus	thymus
30	chr6:163958600-163980000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:163958800-163979600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:163958800-163983000	Weak transcription	NH-A	brain
33	chr6:163959000-163977800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:163959600-163984400	Weak transcription	Ovary	ovary
35	chr6:163959800-163979400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:163959800-163997200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:163960400-163984400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:163960600-163993000	Weak transcription	A549	lung
39	chr6:163961600-163984800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:163965400-163977800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:163965400-163984600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:163965600-163995000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:163966600-163979400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:163966800-163979400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:163966800-163983200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:163966800-163984400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:163966800-163987000	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:163967000-163982800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:163967200-163984200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:163968800-163979600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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