Variant report

Variant	rs7756091
Chromosome Location	chr6:48933503-48933504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11962371	0.81[EUR][1000 genomes]
rs11962526	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11962638	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11963987	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11964769	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11965588	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11968432	0.81[EUR][1000 genomes]
rs11970206	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12191943	0.81[EUR][1000 genomes]
rs16878374	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16878481	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17637574	0.82[EUR][1000 genomes]
rs2396891	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73483364	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73483369	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7738770	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741826	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7755948	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766357	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772797	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603038	chr6:48928544-48938399	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603039	chr6:48928544-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3486533	chr6:48928827-48938933	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3474549	chr6:48929393-48935091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3474550	chr6:48929393-48935091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3514847	chr6:48929843-48939641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv5293	chr6:48930102-48942492	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv436519	chr6:48930207-48939735	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3514848	chr6:48930243-48939566	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv9681	chr6:48930724-48938727	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3472550	chr6:48930809-48938641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3514853	chr6:48930838-48938656	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3514849	chr6:48930845-48938645	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3514850	chr6:48930855-48938582	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3472549	chr6:48930865-48938607	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3472553	chr6:48930875-48938608	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv18961	chr6:48930877-48938505	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3514851	chr6:48930883-48938595	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3486534	chr6:48930887-48938583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv823685	chr6:48930893-48938493	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3472548	chr6:48930896-48938565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3472551	chr6:48930931-48938539	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3514846	chr6:48930942-48938537	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3472554	chr6:48930946-48938535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3486535	chr6:48930946-48938535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3514854	chr6:48930946-48938535	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv514359	chr6:48931081-48938321	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv981352	chr6:48931295-48938297	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1814882	chr6:48931729-48935200	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv2763948	chr6:48931729-48935200	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv442982	chr6:48931729-48935200	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv603040	chr6:48931959-48935838	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv603041	chr6:48931959-48936239	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv603042	chr6:48931959-48936659	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv603043	chr6:48931959-48936902	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv603044	chr6:48931959-48937264	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	nsv603045	chr6:48931959-48937678	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	nsv603046	chr6:48931959-48938399	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	nsv603047	chr6:48931959-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	nsv603048	chr6:48931959-48944544	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
43	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
44	nsv603050	chr6:48932019-48936239	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv603051	chr6:48932019-48936659	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
46	nsv603052	chr6:48932019-48936902	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
47	nsv603053	chr6:48932019-48937264	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
48	nsv603054	chr6:48932019-48937678	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	nsv603055	chr6:48932019-48938399	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv603056	chr6:48932479-48936902	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48933000-48933600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:48933400-48934000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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