Variant report

Variant	rs7772797
Chromosome Location	chr6:48887049-48887050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11962371	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962526	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11962638	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11963987	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968432	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11970206	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12191943	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16878374	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16878481	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2396891	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6906787	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483364	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73483369	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7738770	0.81[EUR][1000 genomes]
rs7741826	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7755948	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7756091	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7766357	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48884400-48887400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:48885400-48887200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:48886000-48887200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:48886000-48887400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:48886200-48887200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:48886800-48888000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:48887000-48887600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:48887000-48888000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:48887000-48888000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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