Variant report

Variant	rs7757235
Chromosome Location	chr6:4586372-4586373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4585100..4587117-chr6:4590950..4593024,2	K562	blood:
2	chr6:4585781..4587336-chr6:4587498..4589697,3	K562	blood:
3	chr6:4585158..4587342-chr6:4603749..4606503,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11754975	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs119194	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11965481	0.81[ASN][1000 genomes]
rs11967928	0.82[ASN][1000 genomes]
rs13195583	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17138501	0.82[ASN][1000 genomes]
rs1923318	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1923319	0.82[ASN][1000 genomes]
rs2223634	0.87[ASN][1000 genomes]
rs2326528	0.81[ASN][1000 genomes]
rs35651062	0.84[ASN][1000 genomes]
rs366253	0.81[EUR][1000 genomes]
rs368513	0.82[EUR][1000 genomes]
rs379512	0.82[EUR][1000 genomes]
rs393589	0.82[EUR][1000 genomes]
rs408709	0.89[ASN][1000 genomes]
rs415223	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs417353	0.82[EUR][1000 genomes]
rs425229	0.82[EUR][1000 genomes]
rs434509	0.80[EUR][1000 genomes]
rs435655	0.81[EUR][1000 genomes]
rs437035	0.81[EUR][1000 genomes]
rs437061	0.82[EUR][1000 genomes]
rs438085	0.82[EUR][1000 genomes]
rs440354	0.80[EUR][1000 genomes]
rs441034	0.82[EUR][1000 genomes]
rs451278	0.81[EUR][1000 genomes]
rs4960003	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59492037	0.82[ASN][1000 genomes]
rs651051	0.80[EUR][1000 genomes]
rs71555857	0.82[ASN][1000 genomes]
rs7738908	0.82[ASN][1000 genomes]
rs7771456	0.91[ASN][1000 genomes]
rs84995	0.80[EUR][1000 genomes]
rs84997	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9504148	0.82[EUR][1000 genomes]
rs9504155	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4581800-4590000	Enhancers	Placenta	Placenta
2	chr6:4582400-4595400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:4582600-4586400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:4582600-4586400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:4582600-4586400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:4582600-4587600	Weak transcription	Left Ventricle	heart
7	chr6:4582800-4587000	Weak transcription	Aorta	Aorta
8	chr6:4583600-4589000	Weak transcription	Esophagus	oesophagus
9	chr6:4584400-4593800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:4585000-4588000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:4585600-4586600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:4585600-4586800	Enhancers	Fetal Heart	heart
13	chr6:4585800-4586600	Enhancers	Brain Substantia Nigra	brain
14	chr6:4585800-4587400	Enhancers	HSMMtube	muscle
15	chr6:4585800-4588000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:4586000-4587600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:4586200-4586400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:4586200-4587200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:4586200-4587400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:4586200-4587400	Enhancers	HMEC	breast
21	chr6:4586200-4587400	Enhancers	NHEK	skin
22	chr6:4586200-4587600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:4586200-4588400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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