Variant report

Variant	rs9504155
Chromosome Location	chr6:4587501-4587502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4587247..4590668-chr6:4591336..4594466,3	MCF-7	breast:
2	chr6:4585781..4587336-chr6:4587498..4589697,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11754975	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs119194	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11965481	0.82[ASN][1000 genomes]
rs11967928	0.83[ASN][1000 genomes]
rs13195583	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17138501	0.83[ASN][1000 genomes]
rs1923318	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1923319	0.83[ASN][1000 genomes]
rs2223634	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2326528	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35651062	0.84[ASN][1000 genomes]
rs366253	0.85[EUR][1000 genomes]
rs368513	0.86[EUR][1000 genomes]
rs379512	0.86[EUR][1000 genomes]
rs393589	0.86[EUR][1000 genomes]
rs408709	0.90[ASN][1000 genomes]
rs415223	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs417353	0.86[EUR][1000 genomes]
rs425229	0.86[EUR][1000 genomes]
rs429527	0.81[EUR][1000 genomes]
rs434509	0.85[EUR][1000 genomes]
rs435655	0.85[EUR][1000 genomes]
rs437035	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs437061	0.86[EUR][1000 genomes]
rs438085	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs440354	0.85[EUR][1000 genomes]
rs441034	0.86[EUR][1000 genomes]
rs441797	0.83[EUR][1000 genomes]
rs451278	0.85[EUR][1000 genomes]
rs4577840	0.80[ASN][1000 genomes]
rs4960003	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59492037	0.83[ASN][1000 genomes]
rs651051	0.85[EUR][1000 genomes]
rs71555857	0.83[ASN][1000 genomes]
rs7738908	0.83[ASN][1000 genomes]
rs7757235	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7771456	0.92[ASN][1000 genomes]
rs84995	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs84997	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9504148	0.86[EUR][1000 genomes]
rs9504149	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4581800-4590000	Enhancers	Placenta	Placenta
2	chr6:4582400-4595400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:4582600-4587600	Weak transcription	Left Ventricle	heart
4	chr6:4583600-4589000	Weak transcription	Esophagus	oesophagus
5	chr6:4584400-4593800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:4585000-4588000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:4585800-4588000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:4586000-4587600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:4586200-4587600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:4586200-4588400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:4587000-4587600	Enhancers	Aorta	Aorta
12	chr6:4587000-4589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:4587200-4593800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:4587400-4587600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:4587400-4589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:4587400-4589400	Weak transcription	HMEC	breast
17	chr6:4587400-4589400	Weak transcription	HSMMtube	muscle
18	chr6:4587400-4589400	Weak transcription	NHEK	skin

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