Variant report

Variant	rs7757740
Chromosome Location	chr6:69970137-69970138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57068560	1.00[AFR][1000 genomes]
rs58798495	1.00[AFR][1000 genomes]
rs59503764	1.00[AFR][1000 genomes]
rs60253244	1.00[AFR][1000 genomes]
rs60393668	1.00[AFR][1000 genomes]
rs60828937	1.00[AFR][1000 genomes]
rs61425854	1.00[AFR][1000 genomes]
rs61589438	1.00[AFR][1000 genomes]
rs61642408	1.00[AFR][1000 genomes]
rs6901301	1.00[YRI][hapmap]
rs6901653	1.00[YRI][hapmap]
rs6911120	1.00[YRI][hapmap]
rs6919398	1.00[YRI][hapmap]
rs6920202	1.00[YRI][hapmap]
rs6920904	1.00[YRI][hapmap]
rs6921597	1.00[YRI][hapmap]
rs7757298	1.00[AFR][1000 genomes]
rs7757299	1.00[AFR][1000 genomes]
rs7758539	1.00[YRI][hapmap]
rs7758720	1.00[AFR][1000 genomes]
rs7759044	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69948600-69970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69969800-69973800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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