Variant report

Variant	rs7759044
Chromosome Location	chr6:69880693-69880694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs57051202	1.00[AFR][1000 genomes]
rs57318813	1.00[AFR][1000 genomes]
rs58160941	1.00[AFR][1000 genomes]
rs58611266	1.00[AFR][1000 genomes]
rs59209510	1.00[AFR][1000 genomes]
rs59287159	1.00[AFR][1000 genomes]
rs59478132	1.00[AFR][1000 genomes]
rs60407587	1.00[AFR][1000 genomes]
rs6455311	1.00[AFR][1000 genomes]
rs6901301	1.00[YRI][hapmap]
rs6901653	1.00[YRI][hapmap]
rs6911120	1.00[YRI][hapmap]
rs6915100	1.00[AFR][1000 genomes]
rs6915436	1.00[AFR][1000 genomes]
rs6919398	1.00[YRI][hapmap]
rs6920202	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6920904	1.00[YRI][hapmap]
rs6921597	1.00[YRI][hapmap]
rs7742206	1.00[AFR][1000 genomes]
rs7745917	1.00[AFR][1000 genomes]
rs7746195	1.00[AFR][1000 genomes]
rs7757740	1.00[YRI][hapmap]
rs7758515	1.00[YRI][hapmap]
rs7758539	1.00[YRI][hapmap]
rs7759194	1.00[AFR][1000 genomes]
rs7767503	1.00[AFR][1000 genomes]
rs7770042	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69876800-69889800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69877000-69891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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