Variant report

Variant	rs59478132
Chromosome Location	chr6:69833484-69833485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57051202	1.00[AFR][1000 genomes]
rs57318813	1.00[AFR][1000 genomes]
rs58160941	1.00[AFR][1000 genomes]
rs58611266	1.00[AFR][1000 genomes]
rs59209510	1.00[AFR][1000 genomes]
rs59287159	1.00[AFR][1000 genomes]
rs60407587	1.00[AFR][1000 genomes]
rs6455311	1.00[AFR][1000 genomes]
rs6915100	1.00[AFR][1000 genomes]
rs6915436	1.00[AFR][1000 genomes]
rs6920202	1.00[AFR][1000 genomes]
rs7742206	1.00[AFR][1000 genomes]
rs7745917	1.00[AFR][1000 genomes]
rs7746195	1.00[AFR][1000 genomes]
rs7759044	1.00[AFR][1000 genomes]
rs7759194	1.00[AFR][1000 genomes]
rs7767503	1.00[AFR][1000 genomes]
rs7770042	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69831800-69838000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69832200-69834800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:69832200-69837800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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