Variant report

Variant	rs57051202
Chromosome Location	chr6:69874645-69874646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57318813	1.00[AFR][1000 genomes]
rs58160941	1.00[AFR][1000 genomes]
rs58611266	1.00[AFR][1000 genomes]
rs59209510	1.00[AFR][1000 genomes]
rs59287159	1.00[AFR][1000 genomes]
rs59478132	1.00[AFR][1000 genomes]
rs60407587	1.00[AFR][1000 genomes]
rs6455311	1.00[AFR][1000 genomes]
rs6915100	1.00[AFR][1000 genomes]
rs6915436	1.00[AFR][1000 genomes]
rs6920202	1.00[AFR][1000 genomes]
rs7742206	1.00[AFR][1000 genomes]
rs7745917	1.00[AFR][1000 genomes]
rs7746195	1.00[AFR][1000 genomes]
rs7759044	1.00[AFR][1000 genomes]
rs7759194	1.00[AFR][1000 genomes]
rs7767503	1.00[AFR][1000 genomes]
rs7770042	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69872600-69875200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:69872800-69875400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:69873400-69875200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:69873600-69874800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:69873600-69874800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:69873600-69875200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:69873800-69875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:69874000-69874800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:69874000-69874800	Enhancers	Right Ventricle	heart
11	chr6:69874200-69874800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:69874200-69877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:69874400-69875000	Enhancers	Brain Substantia Nigra	brain
14	chr6:69874600-69875000	Enhancers	Brain Germinal Matrix	brain
15	chr6:69874600-69875400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:69874600-69876400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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