Variant report

Variant	rs7758655
Chromosome Location	chr6:33583878-33583879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33577318..33579921-chr6:33582665..33584246,2	K562	blood:
2	chr6:33582787..33585683-chr6:33587089..33588741,2	K562	blood:

Variant related genes	Relation type
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6922964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923547	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6924010	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924368	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928896	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7740889	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754237	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7774689	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
6	esv3471778	chr6:33581874-33587572	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3502814	chr6:33581974-33586972	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1808252	chr6:33582090-33585127	Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1810285	chr6:33582090-33585127	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1838904	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1840099	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3502822	chr6:33582379-33587443	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv3502820	chr6:33582474-33586872	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3502823	chr6:33582807-33586474	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3471782	chr6:33582855-33586092	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2575696	chr6:33582877-33586760	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv511877	chr6:33582951-33585863	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3471783	chr6:33582999-33586847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv2083910	chr6:33583013-33586018	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv3471779	chr6:33583068-33585951	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3502816	chr6:33583087-33585942	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3502817	chr6:33583090-33585948	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv3502813	chr6:33583108-33585886	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv3471781	chr6:33583117-33585922	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv3471777	chr6:33583119-33585919	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv3471776	chr6:33583132-33585872	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv3502815	chr6:33583139-33585894	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv3502821	chr6:33583140-33585892	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv4388	chr6:33583153-33585910	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv3471780	chr6:33583183-33585850	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv3502819	chr6:33583196-33585844	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv3471784	chr6:33583198-33585846	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv3502824	chr6:33583198-33585846	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33578000-33587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:33578800-33588000	Weak transcription	Gastric	stomach
3	chr6:33579200-33586600	Weak transcription	Fetal Lung	lung
4	chr6:33579200-33587000	Weak transcription	Pancreas	Pancrea
5	chr6:33579400-33587000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:33579400-33587000	Weak transcription	Right Atrium	heart
7	chr6:33579400-33588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:33580000-33586800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:33580000-33587600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:33581600-33588000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:33581800-33586800	Weak transcription	A549	lung
12	chr6:33582000-33584000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:33582000-33586000	Weak transcription	Spleen	Spleen
14	chr6:33582000-33586600	Weak transcription	Placenta	Placenta
15	chr6:33582000-33586800	Weak transcription	Colonic Mucosa	Colon
16	chr6:33582000-33587000	Weak transcription	Left Ventricle	heart
17	chr6:33582000-33587400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:33582000-33587400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:33582000-33587400	Weak transcription	NHLF	lung
20	chr6:33582200-33584000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:33582200-33586000	Weak transcription	HUVEC	blood vessel
22	chr6:33582200-33586000	Weak transcription	NHEK	skin
23	chr6:33582200-33586800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:33582200-33587200	Enhancers	Hela-S3	cervix
25	chr6:33582200-33587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:33582400-33586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:33582400-33586800	Weak transcription	Stomach Mucosa	stomach
28	chr6:33582400-33587000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:33582400-33587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:33582400-33587200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:33582400-33587200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:33582600-33586800	Weak transcription	Lung	lung
33	chr6:33583000-33584000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:33583000-33584800	Weak transcription	Osteobl	bone
35	chr6:33583000-33586000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:33583000-33586000	Weak transcription	HSMM	muscle
37	chr6:33583000-33586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:33583000-33586600	Weak transcription	NHDF-Ad	bronchial
39	chr6:33583000-33587000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:33583000-33587000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:33583000-33587000	Weak transcription	HSMMtube	muscle
42	chr6:33583200-33586000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:33583200-33586600	Weak transcription	HMEC	breast
44	chr6:33583200-33587000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:33583800-33584200	Enhancers	Right Ventricle	heart
46	chr6:33583800-33585000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:33583800-33587800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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