Variant report

Variant	rs77586647
Chromosome Location	chr2:56411286-56411287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv874162	chr2:56255832-56480571	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv874169	chr2:56383762-56473480	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2762648	chr2:56386656-56422448	Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3411625	chr2:56409873-56412421	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3442902	chr2:56410148-56412896	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3330480	chr2:56410673-56413221	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56410400-56412800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:56410600-56411400	Bivalent Enhancer	Stomach Mucosa	stomach
3	chr2:56410600-56411600	Active TSS	Lung	lung
4	chr2:56410600-56411600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
5	chr2:56410600-56411800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr2:56410600-56411800	Enhancers	Fetal Brain Male	brain
7	chr2:56410600-56411800	Active TSS	Fetal Brain Female	brain
8	chr2:56410600-56411800	Bivalent/Poised TSS	Fetal Stomach	stomach
9	chr2:56410600-56412000	Bivalent/Poised TSS	HepG2	liver
10	chr2:56410600-56412000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
11	chr2:56410600-56412600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr2:56410600-56412600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:56410600-56412800	Active TSS	HSMM	muscle
14	chr2:56410600-56413000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr2:56410600-56413000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:56410600-56413000	Active TSS	Muscle Satellite Cultured Cells	--
17	chr2:56410600-56413000	Active TSS	HSMMtube	muscle
18	chr2:56410600-56413200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr2:56410600-56413200	Active TSS	Brain Angular Gyrus	brain
20	chr2:56410600-56413400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr2:56410600-56413400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:56410600-56413400	Active TSS	Brain Hippocampus Middle	brain
23	chr2:56410600-56413400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:56410600-56413600	Active TSS	Psoas Muscle	Psoas
25	chr2:56410600-56413600	Active TSS	Right Atrium	heart
26	chr2:56410800-56411400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:56410800-56411400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:56410800-56411400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
29	chr2:56410800-56411400	Active TSS	Brain Germinal Matrix	brain
30	chr2:56410800-56411400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
31	chr2:56410800-56411400	Active TSS	Esophagus	oesophagus
32	chr2:56410800-56411400	Active TSS	NHEK	skin
33	chr2:56410800-56411600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:56410800-56411600	Flanking Bivalent TSS/Enh	Liver	Liver
35	chr2:56410800-56411600	Active TSS	Hela-S3	cervix
36	chr2:56410800-56411800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:56410800-56412000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
38	chr2:56410800-56412000	Active TSS	Placenta Amnion	Placenta Amnion
39	chr2:56410800-56412200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr2:56410800-56412200	Active TSS	Brain Anterior Caudate	brain
41	chr2:56410800-56412200	Active TSS	Colon Smooth Muscle	Colon
42	chr2:56410800-56412200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
43	chr2:56410800-56412200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
44	chr2:56410800-56412200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
45	chr2:56410800-56412200	Active TSS	Rectal Smooth Muscle	rectum
46	chr2:56410800-56412400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:56410800-56412400	Active TSS	H9 Cell Line	embryonic stem cell
48	chr2:56410800-56412400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:56410800-56412400	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr2:56410800-56412400	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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