Variant report

Variant	rs7760309
Chromosome Location	chr6:86454023-86454024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:86385559..86389252-chr6:86453678..86456475,4	MCF-7	breast:
2	chr6:86447904..86450443-chr6:86452710..86454543,2	MCF-7	breast:
3	chr6:86452591..86454803-chr6:86455984..86458666,2	K562	blood:

Variant related genes	Relation type
ENSG00000203875	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10944149	0.96[ASN][1000 genomes]
rs6454490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6906618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6910456	0.86[ASN][1000 genomes]
rs6913147	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6937582	0.96[ASN][1000 genomes]
rs7744309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7745560	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7749600	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7764843	0.86[ASN][1000 genomes]
rs7766284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7771366	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7771640	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7775016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9342047	0.96[ASN][1000 genomes]
rs9344538	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9344550	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9353324	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9353344	0.96[ASN][1000 genomes]
rs9359668	0.96[ASN][1000 genomes]
rs9362241	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362248	0.93[ASN][1000 genomes]
rs9362250	0.96[ASN][1000 genomes]
rs9444368	0.96[ASN][1000 genomes]
rs9450307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9450308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9450313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9450331	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7760309	NT5E	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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