Variant report

Variant	rs9362241
Chromosome Location	chr6:86458345-86458346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10944149	0.96[ASN][1000 genomes]
rs6454490	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906618	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6910456	0.86[ASN][1000 genomes]
rs6913147	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6937582	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7760309	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764843	0.86[ASN][1000 genomes]
rs7766284	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7771640	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7774219	0.86[ASN][1000 genomes]
rs9342047	0.96[ASN][1000 genomes]
rs9344550	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9353344	0.96[ASN][1000 genomes]
rs9359668	0.96[ASN][1000 genomes]
rs9362248	0.93[ASN][1000 genomes]
rs9362250	0.96[ASN][1000 genomes]
rs9444368	0.96[ASN][1000 genomes]
rs9450331	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86455600-86458800	Weak transcription	Fetal Intestine Large	intestine
2	chr6:86455600-86460800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:86457800-86459800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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