Variant report

Variant	rs7760471
Chromosome Location	chr6:34357063-34357064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34346965..34349809-chr6:34357029..34359430,2	MCF-7	breast:
2	chr6:34355515..34358143-chr6:34358689..34360982,3	MCF-7	breast:
3	chr6:34355541..34358575-chr6:34361768..34363900,3	K562	blood:
4	chr6:34343338..34346512-chr6:34355803..34358188,3	K562	blood:
5	chr6:34214133..34219385-chr6:34356600..34362053,16	K562	blood:
6	chr6:34344409..34346828-chr6:34354344..34357154,2	K562	blood:
7	chr6:34305135..34307781-chr6:34356782..34358757,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PACSIN1-1	chr6:34355460-34360244	NONHSAT112133
2	lnc-PACSIN1-1	chr6:34355417-34357076	l_3174_chr6:34355416-34362546_76bGuttman_hLF
3	lnc-RPS10-1	chr6:34355435-34357947	ucscGeneNc_uc003ojj_2

No data

Variant related genes	Relation type
ENSG00000272325	Chromatin interaction
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10452589	0.84[EUR][1000 genomes]
rs16889690	0.84[EUR][1000 genomes]
rs16889754	1.00[EUR][1000 genomes]
rs16889851	0.84[EUR][1000 genomes]
rs56022767	0.84[EUR][1000 genomes]
rs58525086	1.00[EUR][1000 genomes]
rs58837036	0.82[EUR][1000 genomes]
rs59368811	0.84[EUR][1000 genomes]
rs59657493	0.92[EUR][1000 genomes]
rs60208416	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60708749	0.84[EUR][1000 genomes]
rs61618829	0.84[EUR][1000 genomes]
rs62399898	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62399910	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62399912	0.84[EUR][1000 genomes]
rs62399914	0.84[EUR][1000 genomes]
rs62399917	0.84[EUR][1000 genomes]
rs62399919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399946	1.00[EUR][1000 genomes]
rs62399947	1.00[EUR][1000 genomes]
rs6906664	0.84[EUR][1000 genomes]
rs73403930	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73403996	0.84[EUR][1000 genomes]
rs73405614	1.00[EUR][1000 genomes]
rs7741867	1.00[EUR][1000 genomes]
rs7742115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv981324	chr6:34351435-34360764	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:34331000-34358400	Weak transcription	Aorta	Aorta
3	chr6:34333600-34358000	Weak transcription	HMEC	breast
4	chr6:34335600-34358800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:34337800-34359000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:34338200-34358600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:34339200-34358000	Weak transcription	NHEK	skin
8	chr6:34339400-34358000	Weak transcription	HUVEC	blood vessel
9	chr6:34340400-34358000	Weak transcription	Fetal Thymus	thymus
10	chr6:34343000-34357600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:34345200-34358600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:34346600-34358400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:34349000-34358800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:34350600-34359000	Weak transcription	Esophagus	oesophagus
15	chr6:34351400-34358000	Weak transcription	Placenta	Placenta
16	chr6:34351600-34357400	Enhancers	Psoas Muscle	Psoas
17	chr6:34351600-34358000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:34351600-34358200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:34351800-34358000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:34352000-34357200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:34352000-34358000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:34352000-34358000	Weak transcription	NH-A	brain
23	chr6:34352000-34358600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:34352000-34358800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:34352200-34357200	Enhancers	HepG2	liver
26	chr6:34352200-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:34352200-34358000	Weak transcription	Fetal Stomach	stomach
28	chr6:34352200-34358800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:34352400-34358000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:34352400-34358000	Weak transcription	HSMM	muscle
31	chr6:34352400-34358400	Weak transcription	Fetal Lung	lung
32	chr6:34352400-34358400	Weak transcription	HSMMtube	muscle
33	chr6:34352400-34358600	Weak transcription	Primary T cells from cord blood	blood
34	chr6:34352600-34358400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:34352600-34358600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:34352800-34358400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:34352800-34358400	Weak transcription	Colonic Mucosa	Colon
38	chr6:34352800-34358600	Weak transcription	Ovary	ovary
39	chr6:34353600-34358400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:34353800-34358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr6:34354000-34358000	Weak transcription	Fetal Intestine Large	intestine
42	chr6:34354000-34358000	Weak transcription	Fetal Intestine Small	intestine
43	chr6:34354000-34358400	Weak transcription	Right Atrium	heart
44	chr6:34354000-34358800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:34354000-34359400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:34354000-34359600	Weak transcription	Small Intestine	intestine
47	chr6:34354200-34358600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:34354400-34358000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:34354400-34358400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:34354400-34358400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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