Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10452589	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885036	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16888777	0.82[AFR][1000 genomes]
rs16889678	0.86[EUR][1000 genomes]
rs16889690	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889754	0.84[EUR][1000 genomes]
rs16889851	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34410945	0.86[AFR][1000 genomes]
rs56022767	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58211939	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58525086	0.84[EUR][1000 genomes]
rs59368811	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60208416	0.84[EUR][1000 genomes]
rs61618829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399870	0.86[AFR][1000 genomes]
rs62399910	0.84[EUR][1000 genomes]
rs62399912	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399919	0.84[EUR][1000 genomes]
rs62399946	0.84[EUR][1000 genomes]
rs62399947	0.84[EUR][1000 genomes]
rs6906664	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908522	0.88[AFR][1000 genomes]
rs73403917	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73403918	0.85[EUR][1000 genomes]
rs73403996	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405614	0.84[EUR][1000 genomes]
rs7741867	0.84[EUR][1000 genomes]
rs7742115	0.84[EUR][1000 genomes]
rs7760471	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34361000-34384800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:34361200-34382400	Weak transcription	Pancreas	Pancrea
3	chr6:34361200-34384800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:34361400-34378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:34361800-34382400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:34362200-34382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:34367400-34379800	Weak transcription	HepG2	liver
8	chr6:34370000-34383400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:34371000-34378200	Weak transcription	A549	lung
10	chr6:34371200-34378400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:34371200-34383400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:34371400-34384000	Weak transcription	Right Ventricle	heart
13	chr6:34372400-34379000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:34372400-34389400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:34373000-34382400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:34373600-34377000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:34374000-34379200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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