Variant report

Variant	rs34410945
Chromosome Location	chr6:34259483-34259484
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34251031..34253241-chr6:34259138..34261085,2	MCF-7	breast:
2	chr6:34253205..34255881-chr6:34257864..34260109,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10452589	0.87[AFR][1000 genomes]
rs16885036	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58211939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59368811	0.88[AFR][1000 genomes]
rs60708749	0.86[AFR][1000 genomes]
rs62399870	0.90[AFR][1000 genomes]
rs62399917	0.86[AFR][1000 genomes]
rs6908522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73403917	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73403918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34240400-34259800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:34240400-34259800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:34240600-34269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:34240800-34261000	Weak transcription	Fetal Kidney	kidney
5	chr6:34241400-34260000	Weak transcription	Esophagus	oesophagus
6	chr6:34244200-34260000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:34244400-34273400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:34245000-34259800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:34245000-34260000	Weak transcription	NH-A	brain
10	chr6:34245000-34262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:34245000-34263400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:34245200-34259600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:34245200-34260800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:34245400-34260800	Weak transcription	Aorta	Aorta
15	chr6:34245600-34261600	Weak transcription	Gastric	stomach
16	chr6:34245800-34260000	Weak transcription	HSMMtube	muscle
17	chr6:34246000-34264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:34246600-34264000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:34246600-34264000	Strong transcription	Dnd41	blood
20	chr6:34247200-34259600	Weak transcription	Fetal Heart	heart
21	chr6:34247400-34259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:34247800-34260600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:34249400-34259800	Weak transcription	Fetal Lung	lung
24	chr6:34250600-34261000	Weak transcription	Colonic Mucosa	Colon
25	chr6:34251000-34283200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:34252200-34259800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:34252200-34259800	Weak transcription	Fetal Brain Male	brain
28	chr6:34253000-34259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:34253000-34259800	Weak transcription	Pancreas	Pancrea
30	chr6:34253000-34259800	Weak transcription	HMEC	breast
31	chr6:34253000-34260800	Weak transcription	A549	lung
32	chr6:34253400-34259800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:34253600-34259800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:34253600-34271200	Weak transcription	Stomach Mucosa	stomach
35	chr6:34253800-34259800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:34255000-34263800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:34255200-34263800	Strong transcription	Fetal Stomach	stomach
38	chr6:34255600-34260000	Weak transcription	HSMM	muscle
39	chr6:34255600-34260800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:34255800-34259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:34255800-34259600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:34255800-34259800	Weak transcription	Liver	Liver
43	chr6:34256000-34259800	Weak transcription	NHLF	lung
44	chr6:34256400-34259800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:34256600-34260600	Weak transcription	Thymus	Thymus
46	chr6:34256600-34260800	Weak transcription	Fetal Brain Female	brain
47	chr6:34256600-34264400	Weak transcription	Right Atrium	heart
48	chr6:34256800-34259600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:34256800-34259600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:34256800-34259600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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