Variant report

Variant	rs16885036
Chromosome Location	chr6:34262716-34262717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34260937..34262929-chr6:34283836..34285697,2	MCF-7	breast:
2	chr6:34261986..34267851-chr6:34269330..34272911,9	K562	blood:
3	chr6:34215500..34217972-chr6:34261210..34263008,2	MCF-7	breast:
4	chr6:34262225..34265045-chr6:34266800..34268628,2	K562	blood:
5	chr6:34261035..34263371-chr6:34289848..34291371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10452589	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16888777	0.88[YRI][hapmap]
rs16889678	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16889690	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs16889754	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16889851	0.85[EUR][1000 genomes]
rs2894394	1.00[CEU][hapmap]
rs34410945	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56022767	0.85[EUR][1000 genomes]
rs58211939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58837036	0.84[EUR][1000 genomes]
rs59368811	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60708749	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61618829	0.85[EUR][1000 genomes]
rs62399870	0.93[AFR][1000 genomes]
rs62399898	0.84[EUR][1000 genomes]
rs62399912	0.85[EUR][1000 genomes]
rs62399914	0.85[EUR][1000 genomes]
rs62399917	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6906664	0.85[EUR][1000 genomes]
rs6908522	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73403917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403996	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9380430	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34240600-34269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:34244400-34273400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:34245000-34263400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:34246000-34264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:34246600-34264000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:34246600-34264000	Strong transcription	Dnd41	blood
7	chr6:34251000-34283200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:34253600-34271200	Weak transcription	Stomach Mucosa	stomach
9	chr6:34255000-34263800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr6:34255200-34263800	Strong transcription	Fetal Stomach	stomach
11	chr6:34256600-34264400	Weak transcription	Right Atrium	heart
12	chr6:34257000-34264400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:34258200-34263600	Strong transcription	Fetal Muscle Leg	muscle
14	chr6:34258200-34263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:34258600-34263200	Strong transcription	Fetal Intestine Small	intestine
16	chr6:34258800-34264600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:34259200-34262800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:34259200-34263000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:34259200-34263000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:34259200-34263000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:34259200-34263600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:34259200-34263600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:34259200-34264000	Strong transcription	HepG2	liver
24	chr6:34259400-34262800	Strong transcription	Brain Hippocampus Middle	brain
25	chr6:34259400-34263000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:34259400-34263200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:34259400-34263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:34259400-34263800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr6:34259600-34262800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:34259600-34263600	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:34259600-34264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:34259800-34262800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:34259800-34263200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:34259800-34263400	Strong transcription	K562	blood
35	chr6:34260000-34263200	Strong transcription	Brain Anterior Caudate	brain
36	chr6:34260200-34263600	Weak transcription	Right Ventricle	heart
37	chr6:34260200-34272800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:34261200-34263000	Weak transcription	HMEC	breast
39	chr6:34261200-34263200	Strong transcription	Left Ventricle	heart
40	chr6:34261200-34263400	Weak transcription	HSMM	muscle
41	chr6:34261400-34263800	Weak transcription	A549	lung
42	chr6:34261400-34264400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:34261400-34266800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:34261400-34269000	Weak transcription	NHDF-Ad	bronchial
45	chr6:34261400-34269200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:34261400-34269400	Weak transcription	NHLF	lung
47	chr6:34261400-34273400	Weak transcription	Fetal Kidney	kidney
48	chr6:34261400-34276000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:34261600-34263400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:34261600-34265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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