Variant report

Variant	rs7761346
Chromosome Location	chr6:45938156-45938157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6934896	1.00[AMR][1000 genomes]
rs6935034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738317	0.98[AFR][1000 genomes]
rs73738319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764169	1.00[AMR][1000 genomes]
rs7764411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45933600-45941400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:45934400-45938600	Enhancers	Right Atrium	heart
4	chr6:45935000-45938400	Weak transcription	Lung	lung
5	chr6:45936000-45941200	Enhancers	Fetal Heart	heart
6	chr6:45936800-45938600	Enhancers	Left Ventricle	heart
7	chr6:45936800-45938600	Enhancers	Ovary	ovary
8	chr6:45936800-45942000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:45937000-45938200	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr6:45937000-45940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:45937200-45938400	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:45937400-45938600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:45937400-45938600	Enhancers	Psoas Muscle	Psoas
14	chr6:45937600-45938400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:45937600-45938600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:45937600-45938600	Enhancers	Fetal Muscle Leg	muscle
17	chr6:45937600-45938600	Enhancers	Fetal Thymus	thymus
18	chr6:45937600-45938800	Genic enhancers	Fetal Intestine Small	intestine
19	chr6:45937600-45939000	Enhancers	Primary T cells from cord blood	blood
20	chr6:45937600-45939000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:45937600-45941600	Enhancers	Right Ventricle	heart
22	chr6:45937800-45938200	Enhancers	Dnd41	blood
23	chr6:45937800-45938600	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:45937800-45938600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:45937800-45938600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:45937800-45938600	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:45937800-45938800	Enhancers	Fetal Intestine Large	intestine
28	chr6:45937800-45939400	Enhancers	Adipose Nuclei	Adipose
29	chr6:45938000-45938400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:45938000-45938600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:45938000-45938600	Enhancers	Colonic Mucosa	Colon
32	chr6:45938000-45939400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:45938000-45939400	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links