Variant report

Variant	rs7764169
Chromosome Location	chr6:45977762-45977763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45965967..45967545-chr6:45976025..45978546,2	K562	blood:
2	chr6:45972108..45974934-chr6:45976922..45979622,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4714886	1.00[EUR][1000 genomes]
rs56185912	1.00[EUR][1000 genomes]
rs6934896	1.00[AMR][1000 genomes]
rs6935034	1.00[AMR][1000 genomes]
rs73738319	1.00[AMR][1000 genomes]
rs73738320	1.00[AMR][1000 genomes]
rs73738322	1.00[AMR][1000 genomes]
rs73738331	1.00[EUR][1000 genomes]
rs7761346	1.00[AMR][1000 genomes]
rs7764411	1.00[AMR][1000 genomes]
rs868906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45966200-45978200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:45968000-45979400	Enhancers	Right Ventricle	heart
3	chr6:45969000-45978000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:45969200-45978400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:45969400-45978800	Weak transcription	Spleen	Spleen
6	chr6:45970600-45978200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:45973200-45981600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:45975600-45978000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:45976000-45981400	Enhancers	Psoas Muscle	Psoas
10	chr6:45976600-45977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:45977200-45978400	Enhancers	Hela-S3	cervix
12	chr6:45977400-45978000	Strong transcription	Fetal Intestine Large	intestine
13	chr6:45977400-45978000	Genic enhancers	Left Ventricle	heart
14	chr6:45977400-45978200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:45977400-45979000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:45977400-45979000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:45977400-45979000	Enhancers	Right Atrium	heart
18	chr6:45977400-45979200	Enhancers	Lung	lung
19	chr6:45977400-45980200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:45977600-45978400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:45977600-45978400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:45977600-45979000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:45977600-45979000	Weak transcription	Fetal Heart	heart
24	chr6:45977600-45979200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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