Variant report

Variant	rs4714886
Chromosome Location	chr6:45882982-45882983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1449647	1.00[EUR][1000 genomes]
rs35618986	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3777545	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs56185912	1.00[EUR][1000 genomes]
rs73738331	1.00[EUR][1000 genomes]
rs7764169	1.00[EUR][1000 genomes]
rs868906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
3	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
5	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
6	chr6:45879800-45889600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:45880000-45884600	Weak transcription	Right Atrium	heart
8	chr6:45880000-45884800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:45880600-45883400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:45880600-45883800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:45881400-45883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:45882000-45884400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:45882000-45885200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:45882000-45889600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:45882000-45889600	Weak transcription	Lung	lung
17	chr6:45882000-45889600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:45882200-45883400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:45882200-45884800	Weak transcription	Right Ventricle	heart
20	chr6:45882200-45889600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:45882200-45890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:45882200-45891200	Weak transcription	Placenta	Placenta
23	chr6:45882400-45884200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:45882400-45884400	Weak transcription	Left Ventricle	heart
25	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine
26	chr6:45882600-45886000	Weak transcription	Fetal Intestine Small	intestine

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