Variant report

Variant	rs868906
Chromosome Location	chr6:45847323-45847324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1449647	1.00[EUR][1000 genomes]
rs4714886	1.00[EUR][1000 genomes]
rs56185912	1.00[EUR][1000 genomes]
rs73738331	1.00[EUR][1000 genomes]
rs7764169	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv885866	chr6:45825244-45863826	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45842400-45847400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:45846200-45847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:45847000-45847600	Enhancers	Duodenum Mucosa	Duodenum
4	chr6:45847000-45849800	Enhancers	Fetal Intestine Small	intestine
5	chr6:45847000-45850600	Enhancers	Fetal Lung	lung
6	chr6:45847200-45847600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:45847200-45847600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:45847200-45848000	Enhancers	Pancreas	Pancrea
9	chr6:45847200-45848000	Enhancers	Spleen	Spleen
10	chr6:45847200-45848200	Enhancers	Right Atrium	heart
11	chr6:45847200-45848200	Enhancers	Right Ventricle	heart
12	chr6:45847200-45848400	Enhancers	Left Ventricle	heart
13	chr6:45847200-45848400	Enhancers	HepG2	liver
14	chr6:45847200-45848800	Enhancers	Fetal Intestine Large	intestine
15	chr6:45847200-45849200	Enhancers	Fetal Heart	heart
16	chr6:45847200-45849200	Enhancers	Placenta	Placenta
17	chr6:45847200-45850000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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