Variant report

Variant	rs7762760
Chromosome Location	chr6:35637341-35637342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:35637057-35637583	HUVEC	blood vessel:	n/a	n/a
2	CEBPB	chr6:35636884-35637400	A549	lung:	n/a	chr6:35637131-35637140 chr6:35637129-35637140 chr6:35637131-35637142 chr6:35637131-35637140 chr6:35637129-35637142 chr6:35637131-35637140 chr6:35637131-35637140
3	POLR2A	chr6:35637060-35637529	HUVEC	blood vessel:	n/a	n/a
4	FOS	chr6:35637145-35638082	HUVEC	blood vessel:	n/a	n/a
5	CEBPB	chr6:35636957-35637427	Hela-S3	cervix:	n/a	chr6:35637131-35637140 chr6:35637129-35637140 chr6:35637131-35637142 chr6:35637131-35637140 chr6:35637129-35637142 chr6:35637131-35637140 chr6:35637131-35637140
6	STAT3	chr6:35636965-35637412	MCF10A-Er-Src	breast:	n/a	chr6:35637026-35637033 chr6:35637391-35637398 chr6:35637131-35637139 chr6:35637323-35637334
7	JUN	chr6:35636514-35637682	HUVEC	blood vessel:	n/a	chr6:35636839-35636848
8	STAT3	chr6:35636814-35637882	MCF10A-Er-Src	breast:	n/a	chr6:35637026-35637033 chr6:35637662-35637673 chr6:35637391-35637398 chr6:35637131-35637139 chr6:35637323-35637334
9	CHD1	chr6:35637022-35637739	GM12878	blood:	n/a	n/a
10	FOS	chr6:35636607-35637766	MCF10A-Er-Src	breast:	n/a	chr6:35636839-35636848
11	GATA3	chr6:35636842-35637496	SK-N-SH	brain:	n/a	chr6:35637188-35637195
12	TBP	chr6:35636993-35637514	GM12878	blood:	n/a	n/a
13	STAT3	chr6:35636952-35637761	MCF10A-Er-Src	breast:	n/a	chr6:35637026-35637033 chr6:35637662-35637673 chr6:35637391-35637398 chr6:35637131-35637139 chr6:35637323-35637334
14	MYC	chr6:35637058-35637512	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr6:35636506-35637763	MCF10A-Er-Src	breast:	n/a	chr6:35636839-35636848
16	ZZZ3	chr6:35636865-35637441	Hela-S3	cervix:	n/a	n/a
17	TCF12	chr6:35636758-35637486	SK-N-SH	brain:	n/a	chr6:35637062-35637069 chr6:35637141-35637149

No.	Distal block	Cell Line	Cell type
1	chr6:35633645..35638870-chr6:35697400..35700718,4	K562	blood:
2	chr6:35635609..35637648-chr6:35705091..35708363,3	K562	blood:
3	chr6:35636915..35638767-chr6:35648462..35650583,2	K562	blood:
4	chr6:35590975..35592795-chr6:35636857..35639450,2	K562	blood:
5	chr6:35637113..35640841-chr6:35653571..35657711,4	K562	blood:
6	chr6:35634752..35642579-chr6:35643861..35648037,11	K562	blood:

Variant related genes	Relation type
MIR5690	TF binding region
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11545923	1.00[CHD][hapmap]
rs16878591	1.00[CHD][hapmap]
rs16878806	1.00[CHD][hapmap]
rs16879378	1.00[CHD][hapmap]
rs58429232	0.87[AFR][1000 genomes]
rs6907851	0.87[AFR][1000 genomes]
rs73417655	1.00[EUR][1000 genomes]
rs73417664	1.00[EUR][1000 genomes]
rs73417678	1.00[EUR][1000 genomes]
rs73417691	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv508403	chr6:35619045-35643768	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv1809645	chr6:35619554-35646435	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
12	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	esv1796766	chr6:35626500-35646435	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
15	esv1797015	chr6:35626500-35646435	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
16	esv1811106	chr6:35626500-35646435	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
17	esv1848709	chr6:35626500-35655890	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	8 gene(s)	inside rSNPs	diseases
18	esv1851034	chr6:35626500-35656400	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
19	esv1840748	chr6:35629669-35656400	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
20	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35631200-35641000	Weak transcription	Esophagus	oesophagus
2	chr6:35631200-35655000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35631400-35654400	Weak transcription	Aorta	Aorta
4	chr6:35631600-35644600	Weak transcription	Small Intestine	intestine
5	chr6:35631600-35646600	Weak transcription	Gastric	stomach
6	chr6:35631600-35652000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:35632000-35638200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35632000-35641000	Weak transcription	Right Atrium	heart
9	chr6:35632000-35641800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:35632000-35643600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:35632400-35642600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:35632400-35643600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:35633000-35638200	Weak transcription	Ovary	ovary
14	chr6:35633000-35648000	Weak transcription	Right Ventricle	heart
15	chr6:35633000-35653600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:35633600-35641000	Weak transcription	Spleen	Spleen
17	chr6:35633600-35645200	Weak transcription	Pancreas	Pancrea
18	chr6:35633800-35637600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:35633800-35642400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:35633800-35642400	Weak transcription	K562	blood
21	chr6:35635000-35638200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:35635000-35655000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:35635600-35637800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr6:35635800-35637600	Enhancers	Fetal Kidney	kidney
25	chr6:35635800-35637800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:35635800-35638000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr6:35636000-35637400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:35636000-35637600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:35636000-35637800	Enhancers	Hela-S3	cervix
30	chr6:35636000-35637800	Enhancers	HSMM	muscle
31	chr6:35636000-35638000	Flanking Active TSS	HUVEC	blood vessel
32	chr6:35636200-35637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:35636200-35638200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:35636200-35638200	Weak transcription	Left Ventricle	heart
35	chr6:35636200-35638600	Weak transcription	Psoas Muscle	Psoas
36	chr6:35636200-35640200	Weak transcription	Fetal Thymus	thymus
37	chr6:35636200-35640600	Weak transcription	Thymus	Thymus
38	chr6:35636200-35644600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:35636200-35650800	Weak transcription	Lung	lung
40	chr6:35636400-35637400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:35636600-35637400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr6:35636600-35637400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr6:35636600-35637600	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr6:35636600-35637800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:35636600-35637800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:35636600-35638000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:35636800-35637400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:35636800-35637400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:35636800-35637400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr6:35636800-35637400	Flanking Active TSS	Primary hematopoietic stem cells	blood

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