Variant report

Variant	rs7763873
Chromosome Location	chr6:74148730-74148731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74138320..74140067-chr6:74147403..74150177,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12191034	1.00[CEU][hapmap]
rs12191652	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192004	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12194939	1.00[CEU][hapmap]
rs12198919	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12200686	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12201569	1.00[CEU][hapmap]
rs12204785	1.00[CEU][hapmap]
rs12209309	1.00[CEU][hapmap]
rs12214308	1.00[CEU][hapmap]
rs12214703	1.00[CEU][hapmap]
rs16883805	1.00[JPT][hapmap]
rs60070262	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6453674	0.83[ASN][1000 genomes]
rs6453675	0.83[ASN][1000 genomes]
rs6909621	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6917928	0.95[CHD][hapmap];0.92[JPT][hapmap]
rs7761170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768980	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs903516	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs903517	0.90[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs9442912	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9442913	0.80[ASN][1000 genomes]
rs9442915	0.92[JPT][hapmap]
rs9442917	1.00[JPT][hapmap]
rs9446909	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74119200-74149000	Weak transcription	Fetal Intestine Large	intestine
2	chr6:74123200-74160200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:74125400-74160800	Weak transcription	Gastric	stomach
4	chr6:74126600-74154200	Weak transcription	Thymus	Thymus
5	chr6:74127400-74155800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:74129000-74149200	Weak transcription	Ovary	ovary
7	chr6:74129000-74160600	Weak transcription	HSMMtube	muscle
8	chr6:74129200-74160200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:74129800-74160200	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:74129800-74160200	Weak transcription	NHLF	lung
11	chr6:74130000-74160600	Weak transcription	NHEK	skin
12	chr6:74130200-74159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:74130200-74160800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:74130400-74150400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:74130400-74159400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:74130400-74160000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:74130600-74160400	Weak transcription	Esophagus	oesophagus
18	chr6:74130600-74160800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:74131800-74151000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:74131800-74160200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:74132200-74160400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:74132200-74160400	Weak transcription	Left Ventricle	heart
23	chr6:74132200-74160800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:74132600-74149400	Weak transcription	Osteobl	bone
25	chr6:74132800-74151600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:74132800-74158400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:74133000-74151400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:74133200-74160200	Weak transcription	Stomach Mucosa	stomach
29	chr6:74133400-74159400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:74133600-74158600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:74133800-74149400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:74134600-74154800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:74135200-74159400	Weak transcription	Colonic Mucosa	Colon
34	chr6:74135200-74160200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:74136000-74158200	Weak transcription	Small Intestine	intestine
36	chr6:74136400-74151000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:74136400-74159600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:74136600-74151200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr6:74136800-74151600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:74137200-74151400	Strong transcription	GM12878-XiMat	blood
41	chr6:74137200-74155800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:74138400-74151000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:74138400-74151000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:74138600-74153200	Weak transcription	A549	lung
45	chr6:74138600-74159600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:74138800-74153400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr6:74139600-74151600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:74139800-74149200	Strong transcription	Fetal Stomach	stomach
49	chr6:74140400-74149200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:74141200-74150200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links