Variant report

Variant	rs9446909
Chromosome Location	chr6:74186635-74186636
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:74186482-74186780	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74184228..74187229-chr6:74189023..74192495,3	K562	blood:

Variant related genes	Relation type
ENSG00000264609	TF binding region
MTO1	TF binding region
ENSG00000135297	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12191652	0.86[ASN][1000 genomes]
rs12192004	0.86[ASN][1000 genomes]
rs12198919	0.86[ASN][1000 genomes]
rs16883805	0.84[ASN][1000 genomes]
rs4706539	0.85[AMR][1000 genomes]
rs59796880	0.82[ASN][1000 genomes]
rs60070262	0.88[ASN][1000 genomes]
rs6453674	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453675	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453678	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902599	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917928	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7761170	0.86[ASN][1000 genomes]
rs7763873	0.83[ASN][1000 genomes]
rs7768980	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs903516	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903517	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442913	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9442914	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9442915	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9442917	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9446914	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9446916	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9446918	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
4	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74172200-74189600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:74172200-74189600	Weak transcription	Stomach Mucosa	stomach
3	chr6:74172200-74197200	Weak transcription	Fetal Heart	heart
4	chr6:74172200-74229200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:74173400-74199000	Strong transcription	Fetal Thymus	thymus
6	chr6:74173600-74198800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:74173800-74198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:74173800-74206200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:74174000-74187600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:74174000-74193600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:74175200-74198800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74175200-74199200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:74175400-74199000	Strong transcription	Stomach Smooth Muscle	stomach
14	chr6:74175600-74188400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:74175600-74198600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:74175600-74199000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:74175600-74199000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:74175800-74188400	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:74175800-74196800	Strong transcription	Liver	Liver
20	chr6:74175800-74197400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:74175800-74198000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:74175800-74198800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:74175800-74198800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:74175800-74198800	Strong transcription	Placenta	Placenta
25	chr6:74175800-74199000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr6:74175800-74199200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:74175800-74201000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:74176000-74187400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr6:74176000-74187800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:74176000-74188200	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr6:74176000-74192200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:74176000-74192200	Strong transcription	Fetal Lung	lung
33	chr6:74176000-74198800	Strong transcription	Brain Anterior Caudate	brain
34	chr6:74176000-74198800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:74176000-74198800	Strong transcription	Fetal Intestine Large	intestine
36	chr6:74176000-74199000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:74176000-74199000	Strong transcription	Adipose Nuclei	Adipose
38	chr6:74176000-74199200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:74176600-74197400	Weak transcription	Fetal Brain Male	brain
40	chr6:74177600-74199000	Strong transcription	Dnd41	blood
41	chr6:74178200-74187000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:74178200-74189400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:74178800-74189600	Weak transcription	HSMMtube	muscle
44	chr6:74179000-74187400	Weak transcription	HMEC	breast
45	chr6:74179000-74188600	Weak transcription	HUVEC	blood vessel
46	chr6:74179000-74189400	Weak transcription	K562	blood
47	chr6:74179000-74189600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:74179600-74189200	Weak transcription	Hela-S3	cervix
49	chr6:74179800-74188200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:74180600-74188400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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