Variant report

Variant	rs7764155
Chromosome Location	chr6:34332931-34332932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34331340..34333770-chr6:34335223..34337521,2	K562	blood:
2	chr6:34331474..34333646-chr6:34338226..34340427,2	K562	blood:
3	chr6:34204139..34206583-chr6:34330883..34333553,2	K562	blood:
4	chr6:34331298..34332999-chr6:34334709..34337113,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2840286	1.00[CHD][hapmap]
rs58600226	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60933648	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912357	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931339	1.00[AMR][1000 genomes]
rs7739644	1.00[AMR][1000 genomes]
rs7740217	1.00[AMR][1000 genomes]
rs7750807	1.00[AMR][1000 genomes]
rs7764521	0.88[LWK][hapmap];1.00[AMR][1000 genomes]
rs7769855	1.00[AMR][1000 genomes]
rs7771935	1.00[AMR][1000 genomes]
rs7773228	0.88[LWK][hapmap];1.00[AMR][1000 genomes]
rs7775790	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:34316200-34333400	Weak transcription	Placenta	Placenta
5	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:34320400-34333400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:34320400-34350400	Weak transcription	Esophagus	oesophagus
8	chr6:34322200-34333600	Weak transcription	Lung	lung
9	chr6:34327000-34351600	Weak transcription	Ovary	ovary
10	chr6:34327600-34342200	Weak transcription	Fetal Kidney	kidney
11	chr6:34327800-34356400	Weak transcription	Hela-S3	cervix
12	chr6:34328000-34337200	Weak transcription	Right Atrium	heart
13	chr6:34328000-34342000	Weak transcription	Fetal Brain Female	brain
14	chr6:34328000-34345400	Weak transcription	Fetal Stomach	stomach
15	chr6:34328000-34351200	Weak transcription	Gastric	stomach
16	chr6:34328400-34337800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:34328800-34333200	Weak transcription	HMEC	breast
19	chr6:34328800-34333800	Weak transcription	NH-A	brain
20	chr6:34328800-34337800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:34329000-34333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:34329000-34333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:34329000-34333400	Weak transcription	Right Ventricle	heart
24	chr6:34329000-34334400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:34329000-34337800	Weak transcription	NHEK	skin
26	chr6:34329200-34333400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:34329600-34345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:34329800-34346400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:34329800-34351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:34330000-34337200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:34331000-34333400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:34331000-34338000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:34331000-34358400	Weak transcription	Aorta	Aorta
34	chr6:34331200-34333400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:34331200-34334400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:34331200-34337600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:34331200-34342200	Weak transcription	Brain Angular Gyrus	brain
38	chr6:34331200-34344400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:34331200-34346000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:34331200-34346200	Weak transcription	Brain Substantia Nigra	brain
41	chr6:34331200-34346200	Weak transcription	Stomach Mucosa	stomach
42	chr6:34331200-34351600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:34331400-34333200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:34331400-34333400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:34331400-34333400	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:34331400-34334400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:34331400-34334400	Weak transcription	HSMM	muscle
48	chr6:34331400-34334400	Weak transcription	Osteobl	bone
49	chr6:34331400-34337200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:34331400-34337600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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