Variant report

Variant	rs7769855
Chromosome Location	chr6:34216086-34216087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34211942..34216855-chr6:34244859..34247946,7	K562	blood:
2	chr6:34214802..34216677-chr6:34541766..34544478,2	K562	blood:
3	chr6:34212618..34219497-chr6:34387813..34394246,15	K562	blood:
4	chr6:34214571..34216737-chr6:34309233..34311711,2	K562	blood:
5	chr6:34213633..34219276-chr6:34358105..34363296,16	MCF-7	breast:
6	chr6:34194289..34196205-chr6:34214333..34216675,2	MCF-7	breast:
7	chr6:34215435..34217871-chr6:34390764..34394019,4	MCF-7	breast:
8	chr12:110867141..110868642-chr6:34214071..34216786,2	K562	blood:
9	chr6:34214133..34219385-chr6:34356600..34362053,16	K562	blood:
10	chr6:34213440..34216386-chr6:34253142..34255941,3	K562	blood:
11	chr6:34213271..34216140-chr6:34224138..34225758,2	K562	blood:
12	chr6:34215295..34220270-chr6:34358417..34361933,11	MCF-7	breast:
13	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
14	chr6:34214030..34216248-chr6:34274968..34277546,2	K562	blood:
15	chr6:34213810..34216675-chr6:34392021..34394891,5	MCF-7	breast:
16	chr6:34163086..34165732-chr6:34214171..34216119,2	MCF-7	breast:
17	chr6:34209798..34218235-chr6:34387971..34396103,20	K562	blood:
18	chr6:34214507..34216888-chr6:34245546..34249056,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270800	Chromatin interaction
ENSG00000258011	Chromatin interaction
ENSG00000196114	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000225339	Chromatin interaction
ENSG00000272325	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12200221	1.00[AMR][1000 genomes]
rs58600226	1.00[AMR][1000 genomes]
rs60933648	1.00[AMR][1000 genomes]
rs6910823	1.00[AFR][1000 genomes]
rs6912357	1.00[AMR][1000 genomes]
rs6918615	1.00[AMR][1000 genomes]
rs6931339	1.00[AMR][1000 genomes]
rs7739644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740217	1.00[AMR][1000 genomes]
rs7750610	1.00[AMR][1000 genomes]
rs7750807	1.00[AMR][1000 genomes]
rs7764155	1.00[AMR][1000 genomes]
rs7764521	1.00[AMR][1000 genomes]
rs7771935	1.00[AMR][1000 genomes]
rs7773228	1.00[AMR][1000 genomes]
rs7775790	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv885784	chr6:34187206-34246714	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv602865	chr6:34203406-34217181	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
6	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	esv1840881	chr6:34204285-34231570	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
10	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
11	nsv969388	chr6:34213490-34240324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34205400-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:34207600-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:34212600-34216200	Weak transcription	Ovary	ovary
4	chr6:34214200-34216200	Enhancers	Spleen	Spleen
5	chr6:34214600-34216200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:34215200-34216600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:34215400-34216200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:34215400-34216200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:34215400-34216200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr6:34215400-34216200	Enhancers	Left Ventricle	heart
11	chr6:34215400-34216200	Genic enhancers	Right Atrium	heart
12	chr6:34215400-34216400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:34215400-34216400	Flanking Active TSS	K562	blood
14	chr6:34215400-34216600	Flanking Active TSS	Fetal Brain Female	brain
15	chr6:34215400-34216600	Flanking Active TSS	NH-A	brain
16	chr6:34215400-34216600	Flanking Active TSS	NHEK	skin
17	chr6:34215600-34216200	Flanking Active TSS	HSMM	muscle
18	chr6:34215600-34216400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr6:34215600-34216400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:34215600-34216400	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr6:34215600-34216400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr6:34215600-34216600	Flanking Active TSS	HMEC	breast
23	chr6:34215600-34216800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:34215800-34216200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:34215800-34216200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:34215800-34216200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr6:34215800-34216200	Enhancers	Pancreas	Pancrea
28	chr6:34215800-34216200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:34215800-34216200	Flanking Active TSS	A549	lung
30	chr6:34215800-34216200	Flanking Active TSS	HepG2	liver
31	chr6:34215800-34216400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:34215800-34216400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:34215800-34216400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:34215800-34216400	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr6:34215800-34216400	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr6:34215800-34216400	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr6:34215800-34216400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:34215800-34216400	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr6:34215800-34216600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:34215800-34216600	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr6:34215800-34216600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr6:34215800-34216600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr6:34215800-34216600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr6:34215800-34216600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:34215800-34216600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr6:34215800-34216600	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr6:34215800-34216600	Flanking Active TSS	Right Ventricle	heart
48	chr6:34215800-34216600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr6:34215800-34216600	Flanking Active TSS	Dnd41	blood
50	chr6:34215800-34216600	Flanking Active TSS	GM12878-XiMat	blood

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