Variant report

Variant	rs7764691
Chromosome Location	chr6:49123365-49123366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59675093	1.00[AMR][1000 genomes]
rs73431726	1.00[AMR][1000 genomes]
rs73431759	1.00[AMR][1000 genomes]
rs73474745	1.00[AMR][1000 genomes]
rs73474755	1.00[AMR][1000 genomes]
rs73474763	1.00[AMR][1000 genomes]
rs73485260	1.00[AMR][1000 genomes]
rs73485270	1.00[AMR][1000 genomes]
rs73485275	1.00[AMR][1000 genomes]
rs73485281	1.00[AMR][1000 genomes]
rs73485283	1.00[AMR][1000 genomes]
rs7739407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751901	1.00[AMR][1000 genomes]
rs7757776	1.00[AMR][1000 genomes]
rs9463461	1.00[AMR][1000 genomes]
rs9918455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49122200-49123600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:49122200-49124400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:49122400-49123600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:49122400-49124400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:49122600-49124200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:49122600-49128800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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